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[182699_at]

Description F46A8.10 /REP_DB=WormBase Gene ID /WP=CE18683 /TR=Q9XV36 /GB=CAB04311.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 42      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 8.5
(-3)
A 		36.4
(3)
A 		14.7
(-1.7)
A 		13.6
(-1.9)
A 		28
B 7.4
(0.2)
A 		10.9
(3)
A 		3.4
(-3)
A 		7.6
(0.4)
A 		8
C 8.6
(-3)
A 		31.2
(3)
A 		18.2
(-0.5)
A 		20.3
(0.1)
A 		23
avr 8.2
(-3) 		26.2
(3) 		12.1
(-1.7) 		13.8
(-1.1) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 8.1
(-2)
A 		10.5
(-1.4)
A 		5.8
(-2.5)
A 		3.6
(-3)
A 		15.9
(-0.2)
A 		30
(3)
A 		26
B 5.7
(-1.7)
A 		3.6
(-3)
A 		6.9
(-1)
A 		6.6
(-1.2)
A 		4.2
(-2.6)
A 		13.4
(3)
A 		10
C 7.3
(-1.8)
A 		2.9
(-3)
A 		10.3
(-1)
A 		4.3
(-2.6)
A 		5.3
(-2.3)
A 		25
(3)
A 		22
avr 7
(-2.3) 		5.7
(-2.7) 		7.7
(-2) 		4.8
(-3) 		8.5
(-1.8) 		22.8
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.1
(-1.9)
A 		7.9
(3)
A 		3.8
(-1.2)
A 		2
(-3)
A 		6
B 2.4
(2.1)
A 		2.7
(3)
A 		0.8
(-3)
A 		1.6
(-0.5)
A 		2
C 2.9
(-3)
A 		9
(3)
A 		6.3
(0.3)
A 		3.4
(-2.5)
A 		6
avr 2.8
(-2.3) 		6.5
(3) 		3.6
(-1.1) 		2.3
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.5
(-2.4)
A 		3.7
(-0.4)
A 		1.3
(-2.6)
A 		0.9
(-3)
A 		4.8
(0.7)
A 		7.3
(3)
A 		6
B 2
(-1.7)
A 		1.2
(-3)
A 		1.7
(-2.2)
A 		1.8
(-2.1)
A 		1.7
(-2.2)
A 		5
(3)
A 		4
C 2.7
(-1.6)
A 		0.9
(-3)
A 		2.6
(-1.6)
A 		0.9
(-3)
A 		1.7
(-2.4)
A 		8.4
(3)
A 		8
avr 2.1
(-2.1) 		1.9
(-2.3) 		1.9
(-2.3) 		1.2
(-3) 		2.7
(-1.4) 		6.9
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182699_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1223
Sequence Type Exemplar sequence
Representative Public ID F46A8.10 NCBI
Target Description F46A8.10 /REP_DB=WormBase Gene ID /WP=CE18683 /TR=Q9XV36 /GB=CAB04311.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060489(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060489 NCBI Caenorhabditis elegans F46A8.10 (F46A8.10) mRNA, complete cds. 11/11 None
GENEFINDER00000013629 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11261474:11264007:1 11/11 None
SNAP00000013615 ENSEMBL cdna:SNAP chromosome:CEL140:I:11262923:11265432:1 10/11 None
F46A8.10 ENSEMBL cdna:known chromosome:CEL140:I:11261474:11264007:1 gene:F46A8.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009683 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11261404-11263938(+) 97.01 100.0
Public Domain and Genome References
Gene Title
Ensembl F46A8.10
Entrez Gene 185826 Entrez gene
SwissProt Q9XV36 EMBL-EBI
WormBase CE34186 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04311 Hypothetical protein F46A8.10 [Caenorhabditis elegans] ref|NP_492890.2| F46A8.10 [Caenorhabditis elegans] 1.0E-149
blast CAB04311 Hypothetical protein F46A8.10 [Caenorhabditis elegans] ref|NP_492890.2| F46A8.10 [Caenorhabditis elegans] 1.0E-146
blast CAB04311 Hypothetical protein F46A8.10 [Caenorhabditis elegans] ref|NP_492890.2| F46A8.10 [Caenorhabditis elegans] 1.0E-111
blast AAA98029 Hypothetical protein K08D10.7 [Caenorhabditis elegans] ref|NP_500501.1| K08D10.7 [Caenorhabditis elegans] 1.0E-99
blast AAA98028 Hypothetical protein K08D10.8 [Caenorhabditis elegans] ref|NP_500500.1| K08D10.8 [Caenorhabditis elegans] 3.0E-98
blast AAA98029 Hypothetical protein K08D10.7 [Caenorhabditis elegans] ref|NP_500501.1| K08D10.7 [Caenorhabditis elegans] 4.0E-96
blast AAA98028 Hypothetical protein K08D10.8 [Caenorhabditis elegans] ref|NP_500500.1| K08D10.8 [Caenorhabditis elegans] 1.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR005552 EMBL-EBI Scramblase 1.0E-126
Pfam IPR005552 EMBL-EBI Scramblase 1.0E-126
Pfam IPR005552 EMBL-EBI Scramblase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:182699_AT
catgatcgtccaatgccttgaaccactcgagatcttcaccggaattgagacccccaatcg
ctacgtggtccacgatatgtattgccgtccgctgctctattgtatggagagatccagttt
ctttgctcgccaacatcaaggatcccaacgcaactttgctatgcagtgcatggatatttt
cggggctcctgtgatgaattgcttcagaagtcggccatgctgctcttgtgatgacttcct
ggcaactgagttcttgggccagaggattggaatgatgaagagagagtgttgtgatgataa
tttccatctcgtgggcactgggagcaacgagccgcttctggtccgttctccaggatgtgc
atgctgtggtggcacgcaagtcttcccggtcatgacctacaacggcgcaaaaatcggaga
aattgttcgtctctacccagggttcatgcaggagtggtacaccgatgcggacacctacat
tgtgcatttcccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGATCGTCCAATGCCTTGAACCA 233 209 327 Antisense
GTCCACGATATGTATTGCCGTCCGC 354 477 394 Antisense
GGAGAGATCCAGTTTCTTTGCTCGC 437 519 432 Antisense
GGATCCCAACGCAACTTTGCTATGC 178 513 466 Antisense
GATATTTTCGGGGCTCCTGTGATGA 23 427 499 Antisense
GATGACTTCCTGGCAACTGAGTTCT 536 411 556 Antisense
TCCATCTCGTGGGCACTGGGAGCAA 475 589 629 Antisense
GCATGCTGTGGTGGCACGCAAGTCT 624 309 685 Antisense
TCCCGGTCATGACCTACAACGGCGC 678 595 710 Antisense
TTCGTCTCTACCCAGGGTTCATGCA 570 695 752 Antisense
GACACCTACATTGTGCATTTCCCAC 11 369 796 Antisense
Sequence Source Affymetrix Proprietary Database