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[182698_at]

Description C09B9.1 /REP_DB=WormBase Gene ID /WP=CE06793 /TR=Q17854 /GB=AAB37557.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 860
1 2 3 4 range
A 141
(-2.4)
P 		76.9
(-2.9)
A 		59
(-3)
A 		882.7
(3)
P 		824
B 119.9
(-2.4)
P 		77.4
(-2.8)
A 		45.2
(-3)
A 		844.9
(3)
P 		800
C 166.7
(-2.3)
P 		88.8
(-2.9)
A 		74.5
(-3)
A 		904.9
(3)
P 		830
avr 142.5
(-2.4) 		81
(-2.8) 		59.6
(-3) 		877.5
(3) 		818

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 98.1
(-0.3)
P 		83.6
(-1.9)
P 		103.8
(0.4)
P 		126.8
(3)
P 		74.4
(-3)
A 		97
(-0.4)
A 		52
B 99.2
(3)
P 		92.4
(2.1)
P 		96.1
(2.6)
A 		70.8
(-0.8)
M 		77.2
(0.1)
A 		54.1
(-3)
P 		45
C 90.3
(-1.7)
P 		136.1
(3)
P 		103.7
(-0.3)
A 		108.3
(0.2)
P 		78.1
(-2.9)
A 		77.1
(-3)
A 		59
avr 95.9
(1.3) 		104
(3) 		101.2
(2.4) 		102
(2.6) 		76.6
(-2.9) 		76.1
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 51.4
(-1.1)
P 		16.7
(-2.9)
A 		15.4
(-3)
A 		129.2
(3)
P 		114
B 38.3
(-2)
P 		19.1
(-2.7)
A 		10.5
(-3)
A 		180
(3)
P 		170
C 55.2
(-1.6)
P 		25.5
(-3)
A 		26
(-3)
A 		152.6
(3)
P 		127
avr 48.3
(-1.6) 		20.4
(-2.9) 		17.3
(-3) 		153.9
(3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 18.1
(-3)
P 		29.7
(1.9)
P 		22.6
(-1.1)
P 		32.2
(3)
P 		22.5
(-1.1)
A 		23.6
(-0.7)
A 		14
B 34.5
(3)
P 		30.8
(1.6)
P 		23.3
(-1.3)
A 		18.7
(-3)
M 		31.4
(1.8)
A 		20.2
(-2.4)
P 		16
C 33.5
(0.6)
P 		41.5
(3)
P 		26.4
(-1.6)
A 		21.8
(-3)
P 		25.3
(-1.9)
A 		25.8
(-1.8)
A 		20
avr 28.7
(0.1) 		34
(3) 		24.1
(-2.5) 		24.2
(-2.4) 		26.4
(-1.2) 		23.2
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182698_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10420
Sequence Type Exemplar sequence
Representative Public ID C09B9.1 NCBI
Target Description C09B9.1 /REP_DB=WormBase Gene ID /WP=CE06793 /TR=Q17854 /GB=AAB37557.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068308(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068308 NCBI Caenorhabditis elegans C09B9.1 (C09B9.1) mRNA, complete cds. 11/11 None
SNAP00000007230 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5037805:5040428:1 10/11 None
GENEFINDER00000007241 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5037805:5040428:1 11/11 None
C09B9.1 ENSEMBL cdna:known chromosome:CEL140:IV:5037805:5040428:1 gene:C09B9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5037810-5040434(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09B9.1
Entrez Gene 182441 Entrez gene
SwissProt Q17854 EMBL-EBI
WormBase CE06793 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37557 Hypothetical protein C09B9.1 [Caenorhabditis elegans] ref|NP_500709.1| C09B9.1 [Caenorhabditis elegans] 0.0
blast AAB37557 Hypothetical protein C09B9.1 [Caenorhabditis elegans] ref|NP_500709.1| C09B9.1 [Caenorhabditis elegans] 1.0E-180
blast CAE72810 Hypothetical protein CBG20087 [Caenorhabditis briggsae] 1.0E-157
blast CAE72810 Hypothetical protein CBG20087 [Caenorhabditis briggsae] 1.0E-147
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500709.1 6 49-71,81-103,128-150,165-187,208-230,250-272
C09B9.1 6 49-71,81-103,128-150,165-187,208-230,250-272
SNAP00000007230 6 49-71,81-103,128-150,165-187,237-259,285-302
GENEFINDER00000007241 6 49-71,81-103,128-150,165-187,208-230,250-272
Sequence
Target Sequence 
>C. ELEGANS:182698_AT
tgttactctattgtggccgaatcgcaacattgcccggagataggattaatgtgttcccaa
cgaatatgatctgtcttatattgcaaattgttccattcttcatctgcattcttaattacg
tggcaactctcaatggagcagctgtactgaaagtcctcgcagcaacttcaagagtggtca
ctctaatttgctttttggcaatatttattcaaatctttatatcaatcgtggtagcgatgc
gtgaacttcccggcgaagcagcaacatcagttgatatgcaaataagagatgcaagaagca
gattggcatggacacttgcctatataattattccatttttgacactaattccatttgtaa
ttgaagcaattttctacatctttcaaatcaatccaacttcgaatagtggcgcgaaagttg
tggaactggtctgctcacttctgataaaaatggtaaacttctatcgtccaacatggatgg
taattataacaatgatctttcttccaccatatcgtcgtgctgttccactcttattctgtt
gctgctcctgctgtccaaaagtcaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTACTCTATTGTGGCCGAATCGC 324 559 452 Antisense
CCGAATCGCAACATTGCCCGGAGAT 147 263 468 Antisense
GCATTCTTAATTACGTGGCAACTCT 421 305 557 Antisense
GAGCAGCTGTACTGAAAGTCCTCGC 668 389 587 Antisense
GAAAGTCCTCGCAGCAACTTCAAGA 428 361 600 Antisense
GAGTGGTCACTCTAATTTGCTTTTT 496 401 623 Antisense
CGTGGTAGCGATGCGTGAACTTCCC 34 245 678 Antisense
TTCCCGGCGAAGCAGCAACATCAGT 602 697 698 Antisense
AGTTGTGGAACTGGTCTGCTCACTT 236 65 867 Antisense
AACAATGATCTTTCTTCCACCATAT 224 135 939 Antisense
TGCTCCTGCTGTCCAAAAGTCAATG 38 583 994 Antisense
Sequence Source Affymetrix Proprietary Database