[Home] | [Total List]

[182697_s_at]

Description F53C11.5 /REP_DB=WormBase Gene ID /WP=CE17854 /TR=Q93763 /GB=CAB02122.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 58      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 84      6grp_total > 69      4grp_total > 0      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 883
1 2 3 4 range
A 692.3
(-2.1)
P 		599.5
(-3)
P 		730.8
(-1.7)
P 		1219.3
(3)
P 		620
B 701.4
(-2.6)
P 		640.1
(-3)
P 		872.5
(-1.3)
P 		1482
(3)
P 		842
C 685.9
(-2.1)
P 		598.7
(-3)
P 		836.7
(-0.6)
P 		1201
(3)
P 		602
avr 693.2
(-2.3) 		612.8
(-3) 		813.3
(-1.3) 		1300.8
(3) 		688

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 475
1 2 3 4 5 6 range
A 555.2
(-1.1)
P 		750.1
(1.4)
P 		410.1
(-3)
P 		539.6
(-1.3)
P 		579.1
(-0.8)
P 		878.4
(3)
P 		468
B 713.4
(0.2)
P 		704.8
(0)
P 		575.9
(-2.2)
P 		557.7
(-2.5)
P 		527.3
(-3)
P 		880.8
(3)
P 		354
C 701.3
(2)
P 		660.6
(1.3)
P 		532.3
(-0.9)
P 		406
(-3)
P 		705.2
(2.1)
P 		760.5
(3)
P 		355
avr 656.6
(-0.2) 		705.2
(0.6) 		506.1
(-2.9) 		501.1
(-3) 		603.9
(-1.2) 		839.9
(3) 		339
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 252.1
(3)
P 		130.1
(-3)
P 		191
(-0)
P 		178.5
(-0.6)
P 		122
B 223.7
(-0.5)
P 		158.1
(-3)
P 		202.2
(-1.3)
P 		315.8
(3)
P 		158
C 227
(-0.2)
P 		172.1
(-3)
P 		291.6
(3)
P 		202.5
(-1.5)
P 		120
avr 234.3
(3) 		153.4
(-3) 		228.3
(2.6) 		232.3
(2.9) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 102.3
(-2.6)
P 		266.8
(3)
P 		89.3
(-3)
P 		136.8
(-1.4)
P 		174.7
(-0.1)
P 		213.9
(1.2)
P 		178
B 248.2
(0.4)
P 		234.6
(0)
P 		139.8
(-3)
P 		147.7
(-2.7)
P 		214.2
(-0.6)
P 		328.4
(3)
P 		189
C 259.9
(3)
P 		201.6
(1)
P 		135.5
(-1.2)
P 		81.6
(-3)
P 		228.2
(1.9)
P 		254.6
(2.8)
P 		178
avr 203.5
(0.4) 		234.3
(1.7) 		121.5
(-3) 		122
(-3) 		205.7
(0.5) 		265.6
(3) 		144
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182697_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12770
Sequence Type Exemplar sequence
Representative Public ID F53C11.5 NCBI
Target Description F53C11.5 /REP_DB=WormBase Gene ID /WP=CE17854 /TR=Q93763 /GB=CAB02122.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074014(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074014 NCBI Caenorhabditis elegans F53C11.5 (F53C11.5) mRNA, complete cds. 11/11 None
SNAP00000007160 ENSEMBL cdna:SNAP chromosome:CEL140:V:13793614:13798508:1 11/11 None
GENEFINDER00000007166 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13790138:13798508:1 11/11 None
F53C11.5 ENSEMBL cdna:known chromosome:CEL140:V:13792368:13798811:1 gene:F53C11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13792475-13798508(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53C11.5
Entrez Gene 179874 Entrez gene
SwissProt Q93763 EMBL-EBI
WormBase CE17854 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02122 Hypothetical protein F53C11.5 [Caenorhabditis elegans] ref|NP_506415.1| F53C11.5 [Caenorhabditis elegans] 0.0
blast CAE66238 Hypothetical protein CBG11482 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182697_S_AT
aatccgatgaaggctgcggcagctgcaaaaaagcctgaaatgacaagagaacaacaattc
acatctcgtcgttcaatgactttccataatacaaatgaagcacaatcaccatttggaaga
ggaccttctggaatattaccatctcgaccagctccacgtaatagatctcaagagccacga
gatattaacaatgaaaagtatcgatcagtacaaaaagatcaacgattgaagcgtacagtt
gatatgctatctcaaaaatgcaagaagagcatagagcttattagaattcaaaacaaagga
tgtttatcagtttctgtagaagatcttttatctgcagctgctgaagaacctcgactcaat
gagacactcgatgatcagctcgacagattgtcggatgctttcgatgcagtacaaagatat
ttggagcaatattcgcttgacggatacaactcaccaacttcagaagatcgatattttgac
gatgatgttctagattcaaaatcgacattttctggtgtgagcactcatcaagaacgaagc
aatgtgccatcaacggagtcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCGATGAAGGCTGCGGCAGCTG 6 169 2089 Antisense
GAACAACAATTCACATCTCGTCGTT 152 353 2137 Antisense
ATCTCGTCGTTCAATGACTTTCCAT 400 33 2151 Antisense
TGGAATATTACCATCTCGACCAGCT 341 545 2217 Antisense
GACCAGCTCCACGTAATAGATCTCA 677 383 2234 Antisense
AGATCTTTTATCTGCAGCTGCTGAA 490 65 2409 Antisense
GAACCTCGACTCAATGAGACACTCG 151 347 2434 Antisense
CGATGATCAGCTCGACAGATTGTCG 242 249 2457 Antisense
GATTGTCGGATGCTTTCGATGCAGT 138 435 2474 Antisense
GCTTGACGGATACAACTCACCAACT 250 305 2523 Antisense
GCAATGTGCCATCAACGGAGTCGTT 64 323 2627 Antisense
Sequence Source Affymetrix Proprietary Database