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[182696_s_at]

Description K03B4.7 /REP_DB=WormBase Gene ID /WP=CE07327 /TR=Q21175 /GB=AAA97999.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 48      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 87      6grp_total > 49      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3941
1 2 3 4 range
A 1863.8
(-1.7)
P 		1608.5
(-2.1)
P 		1026.7
(-3)
P 		4800.5
(3)
P 		3774
B 1694.6
(-1.7)
P 		1410.5
(-2.2)
P 		986.1
(-3)
P 		4299.7
(3)
P 		3314
C 1462.7
(-2)
P 		1110.2
(-2.6)
P 		860
(-3)
P 		4487.3
(3)
P 		3627
avr 1673.7
(-1.8) 		1376.4
(-2.3) 		957.6
(-3) 		4529.2
(3) 		3572

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1645
1 2 3 4 5 6 range
A 1704.3
(3)
P 		1069.6
(-0.2)
P 		765.3
(-1.7)
P 		501.5
(-3)
P 		1069.2
(-0.2)
P 		1615
(2.6)
P 		1203
B 2146.8
(3)
P 		1519.3
(0.3)
P 		839.9
(-2.6)
P 		752.7
(-3)
P 		1370.8
(-0.3)
P 		1913.4
(2)
P 		1394
C 1351.4
(0.5)
P 		1444.9
(0.9)
P 		622.1
(-3)
P 		722.3
(-2.5)
P 		895.7
(-1.7)
P 		1876.9
(3)
P 		1255
avr 1734.2
(2.6) 		1344.6
(0.6) 		742.4
(-2.6) 		658.8
(-3) 		1111.9
(-0.6) 		1801.8
(3) 		1143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 688
1 2 3 4 range
A 678.6
(2.7)
P 		349.2
(-1.9)
P 		268.4
(-3)
P 		702.7
(3)
P 		434
B 540.4
(-0.3)
P 		348.4
(-2)
P 		228.5
(-3)
P 		916.3
(3)
P 		688
C 484.2
(-0.6)
P 		319.2
(-2.7)
P 		299.7
(-3)
P 		756.6
(3)
P 		457
avr 567.7
(0.4) 		338.9
(-2.2) 		265.5
(-3) 		791.9
(3) 		526

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 620
1 2 3 4 5 6 range
A 314.2
(1.2)
P 		380.4
(2.7)
P 		166.7
(-2.1)
P 		127.2
(-3)
P 		322.6
(1.4)
P 		393.2
(3)
P 		266
B 747
(3)
P 		505.7
(0.4)
P 		204
(-2.9)
P 		199.4
(-3)
P 		557
(0.9)
P 		713.5
(2.6)
P 		548
C 500.9
(1.4)
P 		440.9
(0.7)
P 		158.3
(-2.8)
P 		145.3
(-3)
P 		289.8
(-1.2)
P 		628.3
(3)
P 		483
avr 520.7
(2.2) 		442.3
(1.1) 		176.3
(-2.7) 		157.3
(-3) 		389.8
(0.3) 		578.3
(3) 		421
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182696_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14918
Sequence Type Exemplar sequence
Representative Public ID K03B4.7 NCBI
Target Description K03B4.7 /REP_DB=WormBase Gene ID /WP=CE07327 /TR=Q21175 /GB=AAA97999.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071863(11), NM_182355(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071863 NCBI Caenorhabditis elegans K03B4.7a (K03B4.7) mRNA, complete cds. 11/11 None
NM_182355 NCBI Caenorhabditis elegans K03B4.7b (K03B4.7) mRNA, complete cds. 11/11 None
SNAP00000000712 ENSEMBL cdna:SNAP chromosome:CEL140:V:4683924:4692225:-1 11/11 None
GENEFINDER00000000722 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4691569:4692225:-1 11/11 None
K03B4.7a.1 ENSEMBL cdna:known chromosome:CEL140:V:4691416:4692247:-1 gene:K03B4.7 11/11 None
K03B4.7a.2 ENSEMBL cdna:known chromosome:CEL140:V:4691418:4692245:-1 gene:K03B4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4691568-4692225(-) 100.0 100.0
Public Domain and Genome References
Ensembl K03B4.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97999 Hypothetical protein K03B4.7a [Caenorhabditis elegans] ref|NP_504264.1| K03B4.7a [Caenorhabditis elegans] 6.0E-39
blast AAA97999 Hypothetical protein K03B4.7a [Caenorhabditis elegans] ref|NP_504264.1| K03B4.7a [Caenorhabditis elegans] 5.0E-32
blast AAA97999 Hypothetical protein K03B4.7a [Caenorhabditis elegans] ref|NP_504264.1| K03B4.7a [Caenorhabditis elegans] 3.0E-31
blast AAO21423 Hypothetical protein K03B4.7b [Caenorhabditis elegans] ref|NP_872155.1| K03B4.7b [Caenorhabditis elegans] 6.0E-29
blast CAE64174 Hypothetical protein CBG08797 [Caenorhabditis briggsae] 4.0E-26
blast CAE64174 Hypothetical protein CBG08797 [Caenorhabditis briggsae] 2.0E-20
Sequence
Target Sequence 
>C. ELEGANS:182696_S_AT
gctcaggatctggtgagagccctgccgaagagcagctccgtcgtgtggttcgggatgttg
acgaggaagcttccggggaaggatccggcgccgccgaagtgacttcagttccagtcagat
ttgttcgttccgtcgatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCAGGATCTGGTGAGAGCCCTGC 79 301 332 Antisense
TGAGAGCCCTGCCGAAGAGCAGCTC 266 569 345 Antisense
CTCCGTCGTGTGGTTCGGGATGTTG 170 235 367 Antisense
GTGTGGTTCGGGATGTTGACGAGGA 34 489 374 Antisense
GGATGTTGACGAGGAAGCTTCCGGG 497 513 384 Antisense
TGTTGACGAGGAAGCTTCCGGGGAA 707 553 387 Antisense
CGCCGAAGTGACTTCAGTTCCAGTC 405 255 423 Antisense
CTTCAGTTCCAGTCAGATTTGTTCG 226 221 434 Antisense
GTTCCAGTCAGATTTGTTCGTTCCG 383 441 439 Antisense
TCCAGTCAGATTTGTTCGTTCCGTC 18 591 441 Antisense
TCAGATTTGTTCGTTCCGTCGATGC 463 623 446 Antisense
Sequence Source Affymetrix Proprietary Database