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[182695_at]

Description K03B4.7 /REP_DB=WormBase Gene ID /WP=CE07327 /TR=Q21175 /GB=AAA97999.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 11      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 145.9
(-2.1)
A 		164.2
(-1.8)
A 		103.3
(-3)
A 		401.5
(3)
P 		298
B 183
(-1.1)
P 		112.7
(-3)
A 		183.3
(-1)
A 		329.4
(3)
P 		217
C 157.9
(-1.5)
M 		184.6
(-0.8)
M 		103.5
(-3)
A 		326.6
(3)
P 		223
avr 162.3
(-2.1) 		153.8
(-2.4) 		130
(-3) 		352.5
(3) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 120.7
(3)
A 		69.2
(-1.7)
A 		80.4
(-0.7)
P 		54.8
(-3)
A 		76.2
(-1.1)
A 		85.4
(-0.2)
A 		66
B 122.9
(2.3)
P 		106.5
(1.5)
A 		13.6
(-3)
A 		26.5
(-2.4)
A 		97.5
(1)
M 		138.4
(3)
P 		125
C 141.9
(3)
M 		62.5
(-1.5)
A 		89.7
(0)
A 		36.2
(-3)
A 		110.5
(1.2)
A 		141.3
(3)
P 		106
avr 128.5
(3) 		79.4
(-0.3) 		61.2
(-1.5) 		39.2
(-3) 		94.7
(0.7) 		121.7
(2.5) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 53.1
(1.9)
A 		35.6
(-1.4)
A 		27
(-3)
A 		58.8
(3)
P 		32
B 58.4
(1.3)
P 		27.8
(-3)
A 		42.5
(-0.9)
A 		70.2
(3)
P 		42
C 52.3
(2.1)
M 		53.1
(2.4)
M 		36.1
(-3)
A 		55.1
(3)
P 		19
avr 54.6
(1.4) 		38.8
(-2.2) 		35.2
(-3) 		61.4
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 22.2
(1.7)
A 		24.6
(3)
A 		17.5
(-1)
P 		13.9
(-3)
A 		23
(2.1)
A 		20.8
(0.9)
A 		11
B 42.7
(1.9)
P 		35.4
(1)
A 		3.3
(-3)
A 		7
(-2.5)
A 		39.6
(1.5)
M 		51.6
(3)
P 		48
C 52.6
(3)
M 		19.1
(-1.4)
A 		22.8
(-0.9)
A 		7.3
(-3)
A 		35.7
(0.8)
A 		47.3
(2.3)
P 		45
avr 39.2
(2.9) 		26.4
(0.3) 		14.5
(-2) 		9.4
(-3) 		32.8
(1.6) 		39.9
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182695_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14918
Sequence Type Exemplar sequence
Representative Public ID K03B4.7 NCBI
Target Description K03B4.7 /REP_DB=WormBase Gene ID /WP=CE07327 /TR=Q21175 /GB=AAA97999.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182355(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182355 NCBI Caenorhabditis elegans K03B4.7b (K03B4.7) mRNA, complete cds. 10/11 None
GENEFINDER00000000722 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4691569:4692225:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071863 6/11 Cross Hyb Matching Probes A 
SNAP00000000712 6/11 Cross Hyb Matching Probes None
K03B4.7a.1 6/11 Cross Hyb Matching Probes None
K03B4.7a.2 6/11 Cross Hyb Matching Probes None
K03B4.7b 7/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178860 2 1 NM_182355 171743_x_at (11), 182695_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4691568-4692225(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97999 Hypothetical protein K03B4.7a [Caenorhabditis elegans] ref|NP_504264.1| K03B4.7a [Caenorhabditis elegans] 5.0E-32
blast AAO21423 Hypothetical protein K03B4.7b [Caenorhabditis elegans] ref|NP_872155.1| K03B4.7b [Caenorhabditis elegans] 6.0E-29
blast CAE64174 Hypothetical protein CBG08797 [Caenorhabditis briggsae] 3.0E-20
blast AAA97999 Hypothetical protein K03B4.7a [Caenorhabditis elegans] ref|NP_504264.1| K03B4.7a [Caenorhabditis elegans] 2.0E-14
blast AAO21423 Hypothetical protein K03B4.7b [Caenorhabditis elegans] ref|NP_872155.1| K03B4.7b [Caenorhabditis elegans] 3.0E-14
blast CAE64174 Hypothetical protein CBG08797 [Caenorhabditis briggsae] 3.0E-10
Sequence
Target Sequence 
>C. ELEGANS:182695_AT
gccttcaacatcttccgcgatgaagttgtcccggaggagcaactcctggcggttcgtcgt
acgactcgtgatgcttccgacagtagcagtgattcggatgagaaggacgatgccaagact
accgttactttttgctttaaaaacaaaaaaaaaatccaaatttttccggcggtctggcta
cgaacttcggccgcggccatgaccgcgacgcagcggcgagcggagcggctcaaaaaactg
attttttcttccttttttctgccaaaacgcgatggctcaggatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTTCAACATCTTCCGCGATGAAG 46 281 58 Antisense
CGCGATGAAGTTGTCCCGGAGGAGC 172 255 73 Antisense
TTGTCCCGGAGGAGCAACTCCTGGC 43 667 83 Antisense
CGGTTCGTCGTACGACTCGTGATGC 594 243 107 Antisense
ACTCGTGATGCTTCCGACAGTAGCA 257 97 121 Antisense
CGACAGTAGCAGTGATTCGGATGAG 297 249 135 Antisense
TCCAAATTTTTCCGGCGGTCTGGCT 45 587 212 Antisense
CGGCGAGCGGAGCGGCTCAAAAAAC 609 239 271 Antisense
GCGGAGCGGCTCAAAAAACTGATTT 621 291 277 Antisense
TTCCTTTTTTCTGCCAAAACGCGAT 65 699 306 Antisense
GCCAAAACGCGATGGCTCAGGATCT 564 277 318 Antisense
Sequence Source Affymetrix Proprietary Database