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[182694_at]

Description T19E10.2 /REP_DB=WormBase Gene ID /WP=CE01093 /TR=Q22589 /GB=CAA86787.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 26      6grp_cgc > 66      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 43.5
(-3)
A 		63.9
(-1.7)
A 		58.3
(-2.1)
A 		137.5
(3)
A 		94
B 48.2
(-3)
A 		109.5
(3)
A 		63.6
(-1.5)
A 		101.1
(2.2)
A 		61
C 68.7
(-2.2)
A 		66.8
(-3)
A 		80.3
(3)
A 		69.4
(-1.8)
A 		14
avr 53.5
(-3) 		80.1
(0.2) 		67.4
(-1.3) 		102.7
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 80.4
(1.9)
A 		27.2
(-3)
A 		91.8
(3)
A 		54.1
(-0.5)
A 		70.9
(1.1)
A 		39.9
(-1.8)
A 		65
B 37.9
(-2.3)
A 		47.8
(-1.3)
A 		30.9
(-3)
A 		65.7
(0.6)
A 		34.2
(-2.7)
A 		89.4
(3)
A 		59
C 39.2
(-3)
A 		59.3
(2.6)
A 		59.2
(2.6)
A 		60.7
(3)
A 		52.6
(0.7)
A 		51.6
(0.5)
A 		22
avr 52.5
(-0.1) 		44.8
(-3) 		60.6
(3) 		60.2
(2.8) 		52.6
(-0) 		60.3
(2.9) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 15.8
(-1.2)
A 		13.9
(-3)
A 		15.2
(-1.7)
A 		20.1
(3)
A 		6
B 15.4
(-2.7)
A 		27.1
(3)
A 		14.7
(-3)
A 		21.5
(0.3)
A 		12
C 22.7
(1)
A 		19.2
(-0.2)
A 		28
(3)
A 		11.7
(-3)
A 		16
avr 18
(-2.5) 		20.1
(3) 		19.3
(0.9) 		17.8
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 14.8
(-0.4)
A 		9.7
(-3)
A 		20
(2.3)
A 		13.7
(-0.9)
A 		21.4
(3)
A 		9.7
(-3)
A 		12
B 13.2
(-1.7)
A 		15.9
(-1)
A 		7.5
(-3)
A 		17.4
(-0.7)
A 		13.9
(-1.5)
A 		33.3
(3)
A 		26
C 14.5
(-0.7)
A 		18.1
(3)
A 		15.1
(-0.1)
A 		12.2
(-3)
A 		17
(1.9)
A 		17.3
(2.2)
A 		6
avr 14.2
(-3) 		14.6
(-2.6) 		14.2
(-3) 		14.4
(-2.8) 		17.4
(0.3) 		20.1
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182694_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2949
Sequence Type Exemplar sequence
Representative Public ID T19E10.2 NCBI
Target Description T19E10.2 /REP_DB=WormBase Gene ID /WP=CE01093 /TR=Q22589 /GB=CAA86787.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026868
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C52A11.4b ENSEMBL cdna:known chromosome:CEL140:II:10757390:10771873:-1 gene:C52A11.4 None
SNAP00000020895 ENSEMBL cdna:SNAP chromosome:CEL140:II:10770966:10773134:-1 None
GENEFINDER00000020898 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10766097:10774478:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026868 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10770966-10774969(-) 90.96 90.96
Public Domain and Genome References
Ensembl C52A11.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE48511 Hypothetical protein C52A11.4b [Caenorhabditis elegans] emb|CAE48495.1| Hypothetical protein C52A11.4b [Caenorhabditis elegans] ref|NP_001022039.1| Multiple PDZ domain protein family member (mpz-1) [Caenorhabditis elegans] 0.0
blast CAA86789 Hypothetical protein C52A11.4a [Caenorhabditis elegans] emb|CAA86769.3| Hypothetical protein C52A11.4a [Caenorhabditis elegans] ref|NP_001022038.1| Multiple PDZ domain protein family member (mpz-1) [Caenorhabditis elegans] 0.0
blast CAE59603 Hypothetical protein CBG03011 [Caenorhabditis briggsae] 0.0
blast T25006 hypothetical protein T19E10.2 - Caenorhabditis elegans 4.0E-63
blast T25006 hypothetical protein T19E10.2 - Caenorhabditis elegans 9.0E-25
blast CAE59603 Hypothetical protein CBG03011 [Caenorhabditis briggsae] 1.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 6.1E-12
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.1E-17
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.9E-7
Sequence
Target Sequence 
>C. ELEGANS:182694_AT
acaacagctccattggacatttcaaatttcaaatgtccgcccgttcatttctcactcaac
ctttccggccgtgctcaacaggcagcacgcgaggcctatggccgatgccgttacaatccg
aggaagaacggatacgtgaagtgctgcgtgaattgaaatcaagaaaagaaggcggtgacg
tcaaagaggatatcgagagaatcgagagaatcctcaaagatccactttttaaacaactat
cccatcagccaacatcttctccggaaaccttcaaatcagataatcgtaggaatagcgctg
cagagaaacgagttgtagagatcagcaaacggatcgagagtagtgaaattcggaagaatc
tcaaacaaaatcaaaagcttctgttcatctacgtggatgcaaaactcgtcgatccggttg
ttctagagacaaaagaaaaatcatctcgtctgctggttgtcggtccaaaagacgtcaaga
atcgacgcgaaattttacggttcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACAGCTCCATTGGACATTTCAA 191 113 203 Antisense
TTCAAATTTCAAATGTCCGCCCGTT 32 687 223 Antisense
CAACAGGCAGCACGCGAGGCCTATG 322 189 278 Antisense
TATGGCCGATGCCGTTACAATCCGA 403 651 299 Antisense
GAGAGAATCCTCAAAGATCCACTTT 331 395 406 Antisense
TTAAACAACTATCCCATCAGCCAAC 143 685 431 Antisense
TCTTCTCCGGAAACCTTCAAATCAG 413 615 457 Antisense
AAAGCTTCTGTTCATCTACGTGGAT 102 125 576 Antisense
GAAAAATCATCTCGTCTGCTGGTTG 677 355 637 Antisense
GTCTGCTGGTTGTCGGTCCAAAAGA 157 471 650 Antisense
TCGACGCGAAATTTTACGGTTCTTG 545 277 684 Antisense
Sequence Source Affymetrix Proprietary Database