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[182693_s_at]

Description T04A11.2 /REP_DB=WormBase Gene ID /WP=CE13124 /TR=O18682 /GB=CAB05607.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 54      4grp_highest_8_8 > 40      4grp_high_8_8 > 42      6grp_highest_nonorm > 75      6grp_total > 45      4grp_total > 53      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1417
1 2 3 4 range
A 1521.1
(3)
P 		1404.4
(2.4)
P 		802
(-0.4)
P 		262.6
(-3)
P 		1259
B 1594.7
(3)
P 		1112.4
(1)
P 		876.7
(-0)
P 		177.7
(-3)
P 		1417
C 1404.8
(3)
P 		1087.6
(1.3)
P 		847.3
(0)
P 		285.4
(-3)
P 		1119
avr 1506.9
(3) 		1201.5
(1.6) 		842
(-0.2) 		241.9
(-3) 		1265

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 605
1 2 3 4 5 6 range
A 1016.5
(1.5)
P 		877.7
(0.1)
P 		1158.5
(3)
P 		762.3
(-1.1)
P 		585.2
(-3)
P 		852.1
(-0.2)
P 		573
B 959.4
(1)
P 		1070.1
(2.5)
P 		1110.7
(3)
P 		791.4
(-1.3)
P 		661
(-3)
P 		1029
(1.9)
P 		450
C 772.4
(-0.3)
P 		948.2
(1.8)
P 		900
(1.2)
P 		750.5
(-0.6)
P 		553.7
(-3)
P 		1048.1
(3)
P 		494
avr 916.1
(1.2) 		965.3
(1.8) 		1056.4
(3) 		768.1
(-0.8) 		600
(-3) 		976.4
(1.9) 		456
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 516
1 2 3 4 range
A 553.9
(3)
P 		304.9
(0.1)
P 		209.7
(-1)
P 		38.4
(-3)
P 		516
B 508.5
(3)
P 		274.7
(0)
P 		203.2
(-0.9)
P 		37.9
(-3)
P 		471
C 465
(3)
P 		312.7
(0.8)
P 		295.3
(0.6)
P 		48.1
(-3)
P 		417
avr 509.1
(3) 		297.4
(0.3) 		236.1
(-0.5) 		41.5
(-3) 		468

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 187.4
(-2.5)
P 		312.2
(3)
P 		252.3
(0.3)
P 		193.3
(-2.3)
P 		176.6
(-3)
P 		207.5
(-1.6)
P 		136
B 333.8
(1.3)
P 		356.2
(2.1)
P 		269.7
(-0.9)
P 		209.6
(-3)
P 		268.6
(-1)
P 		383.7
(3)
P 		174
C 286.3
(1.1)
P 		289.3
(1.2)
P 		229.1
(-0.7)
P 		150.9
(-3)
P 		179.2
(-2.2)
P 		350.9
(3)
P 		200
avr 269.2
(0.8) 		319.2
(3) 		250.4
(-0.1) 		184.6
(-3) 		208.1
(-2) 		314
(2.8) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182693_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9664
Sequence Type Exemplar sequence
Representative Public ID T04A11.2 NCBI
Target Description T04A11.2 /REP_DB=WormBase Gene ID /WP=CE13124 /TR=O18682 /GB=CAB05607.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069985(11), NM_069988(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069985 NCBI Caenorhabditis elegans T04A11.2 (T04A11.2) mRNA, complete cds. 11/11 None
NM_069988 NCBI Caenorhabditis elegans T04A11.5 (T04A11.5) mRNA, complete cds. 11/11 None
SNAP00000015158 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12477344:12482594:-1 11/11 None
SNAP00000015161 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12484881:12486508:-1 11/11 None
GENEFINDER00000015170 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12477344:12478765:-1 11/11 None
GENEFINDER00000015173 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12484881:12486508:-1 11/11 None
T04A11.2 ENSEMBL cdna:known chromosome:CEL140:IV:12477344:12478971:-1 gene:T04A11.2 11/11 None
T04A11.5 ENSEMBL cdna:known chromosome:CEL140:IV:12484881:12486508:-1 gene:T04A11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12477349-12478977(-) 100.0 100.0
chrIV:12484886-12486514(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl T04A11.2
T04A11.5
Entrez Gene 178200 Entrez gene
188043 Entrez gene
SwissProt O18682 EMBL-EBI
WormBase CE13124 Wormbase
CE13124 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264355_AT phenazine biosynthesis PhzC/PhzF family protein at
ATGENOME1:15022_AT phenazine biosynthesis PhzC/PhzF family protein at
MG-U74CV2:165610_AT RIKEN cDNA 3110049J23 gene mm
MOE430A:1449462_AT RIKEN cDNA 3110049J23 gene mm
MOUSE430A_2:1449462_AT RIKEN cDNA 3110049J23 gene mm
MOUSE430_2:1449462_AT RIKEN cDNA 3110049J23 gene mm
MG-U74BV2:113856_AT RIKEN cDNA 3110049J23 gene (3110049J23Rik), mRNA mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9058 biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05608 Hypothetical protein T04A11.5 [Caenorhabditis elegans] emb|CAB05607.1| Hypothetical protein T04A11.2 [Caenorhabditis elegans] ref|NP_502386.1| T04A11.2 [Caenorhabditis elegans] ref|NP_502389.1| T04A11.5 [Caenorhabditis elegans] 0.0
blast CAB05608 Hypothetical protein T04A11.5 [Caenorhabditis elegans] emb|CAB05607.1| Hypothetical protein T04A11.2 [Caenorhabditis elegans] ref|NP_502386.1| T04A11.2 [Caenorhabditis elegans] ref|NP_502389.1| T04A11.5 [Caenorhabditis elegans] 1.0E-164
blast CAE59868 Hypothetical protein CBG03344 [Caenorhabditis briggsae] 1.0E-155
Protein Domains
Database ID Description E-Value
Pfam IPR003719 EMBL-EBI Phenazine biosynthesis PhzC/PhzF protein 1.0E-126
Pfam IPR003719 EMBL-EBI Phenazine biosynthesis PhzC/PhzF protein 1.0E-126
Pfam IPR003719 EMBL-EBI Phenazine biosynthesis PhzC/PhzF protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:182693_S_AT
gataccccaaatccattgcagggcattttttcggagttcgaagcaccatcattcctgttt
gaagttatcaagtgcgttgttccaactgagatgattatcgaatcagtggtgtactcttca
aaatctcgcaaactaatcgtcattgtggatccagaaaccaccaaatttgaacttgaagcc
gttcgcattgattgctcaaaaatgctcgagattcacgatggaagttttgtaaggggcctt
gccatttctcttcgtccatcaaatccaatggctcaaggatttgtggattcttctgatgaa
ccatatgactatgcatgccgttattttgctccgtgggttggaatcgatgaggatccagca
actggatctgcgcaatgtgttatgggaccgttctggtcgaagatgctcgggaagaacgag
ttgtatgcttttcaggcttttccaactcgaggagctcaattcaggattcgtcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACCCCAAATCCATTGCAGGGCA 127 425 421 Antisense
TGCAGGGCATTTTTTCGGAGTTCGA 147 553 437 Antisense
TCGAAGCACCATCATTCCTGTTTGA 437 601 458 Antisense
GTGGTGTACTCTTCAAAATCTCGCA 370 489 526 Antisense
GAAGCCGTTCGCATTGATTGCTCAA 178 345 595 Antisense
TTCTCTTCGTCCATCAAATCCAATG 243 689 666 Antisense
TATGCATGCCGTTATTTTGCTCCGT 353 657 730 Antisense
GCGCAATGTGTTATGGGACCGTTCT 209 285 790 Antisense
GACCGTTCTGGTCGAAGATGCTCGG 369 379 806 Antisense
GTATGCTTTTCAGGCTTTTCCAACT 616 455 843 Antisense
GGAGCTCAATTCAGGATTCGTCTTC 200 521 871 Antisense
Sequence Source Affymetrix Proprietary Database