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[182692_at]

Description C42C1.9 /REP_DB=WormBase Gene ID /WP=CE26913 /TR=O44966 /GB=AAK72294.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 4.6
(-3)
A 		7.9
(-2.9)
A 		6.8
(-2.9)
A 		183.3
(3)
A 		179
B 4.6
(-3)
A 		6.1
(-2.8)
A 		8.6
(-2.6)
A 		59
(3)
A 		54
C 4.4
(-2.9)
A 		5.4
(-2.9)
A 		2.3
(-3)
A 		199.2
(3)
A 		197
avr 4.5
(-3) 		6.5
(-2.9) 		5.9
(-2.9) 		147.2
(3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 4.3
(-3)
A 		3.1
(-3)
A 		7.5
(-2.8)
A 		15.3
(-2.5)
A 		150.1
(3)
A 		139.1
(2.6)
A 		147
B 4.5
(-3)
A 		7.6
(-2.9)
A 		8.1
(-2.9)
A 		56.7
(-1.5)
A 		155.6
(1.2)
A 		218.4
(3)
P 		214
C 3.9
(-3)
A 		8.5
(-2.8)
A 		6.1
(-2.9)
A 		13.1
(-2.6)
A 		91.5
(0.6)
A 		148.2
(3)
A 		144
avr 4.2
(-3) 		6.4
(-2.9) 		7.2
(-2.9) 		28.4
(-2.1) 		132.4
(1.7) 		168.6
(3) 		164
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 1.7
(-3)
A 		1.7
(-3)
A 		1.8
(-3)
A 		26.8
(3)
A 		25
B 1.5
(-3)
A 		1.5
(-3)
A 		2
(-2.7)
A 		12.6
(3)
A 		11
C 1.5
(-2.9)
A 		1.6
(-2.9)
A 		0.8
(-3)
A 		33.6
(3)
A 		33
avr 1.6
(-3) 		1.6
(-3) 		1.5
(-3) 		24.3
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.1
(-3)
A 		1.6
(-2.9)
A 		3.9
(-2.6)
A 		45.3
(3)
A 		33.9
(1.5)
A 		45
B 1.6
(-3)
A 		2.5
(-2.9)
A 		2
(-3)
A 		15
(-2)
A 		63.2
(1.6)
A 		81.4
(3)
P 		80
C 1.5
(-3)
A 		2.6
(-2.9)
A 		1.5
(-3)
A 		2.6
(-2.9)
A 		29.6
(0.5)
A 		49.6
(3)
A 		48
avr 1.3
(-3) 		2.1
(-2.9) 		1.7
(-3) 		7.2
(-2.3) 		46
(2) 		55
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182692_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8707
Sequence Type Exemplar sequence
Representative Public ID C42C1.9 NCBI
Target Description C42C1.9 /REP_DB=WormBase Gene ID /WP=CE26913 /TR=O44966 /GB=AAK72294.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069939(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069939 NCBI Caenorhabditis elegans C42C1.9 (C42C1.9) mRNA, complete cds. 11/11 None
SNAP00000027943 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12289750:12290933:1 11/11 None
GENEFINDER00000027952 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12289522:12290933:1 11/11 None
C42C1.9 ENSEMBL cdna:known chromosome:CEL140:IV:12289438:12290933:1 gene:C42C1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12287906-12290939(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C42C1.9
Entrez Gene 183401 Entrez gene
SwissProt O44966 EMBL-EBI
WormBase CE26913 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_502340 C42C1.9 [Caenorhabditis elegans] gb|AAK72294.1| Hypothetical protein C42C1.9 [Caenorhabditis elegans] 1.0E-151
blast T32896 hypothetical protein C42C1.9 - Caenorhabditis elegans 1.0E-151
blast NP_502340 C42C1.9 [Caenorhabditis elegans] gb|AAK72294.1| Hypothetical protein C42C1.9 [Caenorhabditis elegans] 1.0E-122
blast T32896 hypothetical protein C42C1.9 - Caenorhabditis elegans 1.0E-122
blast NP_502340 C42C1.9 [Caenorhabditis elegans] gb|AAK72294.1| Hypothetical protein C42C1.9 [Caenorhabditis elegans] 1.0E-113
blast T32896 hypothetical protein C42C1.9 - Caenorhabditis elegans 1.0E-113
blast CAE62221 Hypothetical protein CBG06272 [Caenorhabditis briggsae] 2.0E-86
blast CAE62221 Hypothetical protein CBG06272 [Caenorhabditis briggsae] 2.0E-83
Sequence
Target Sequence 
>C. ELEGANS:182692_AT
acttctcatgttatcacgtcgactctgaatactgaaaaatcattggaaacgtatctcgat
gagtacggtaaattcccgcttccagattggatgaccgctgtgatcgttcgtgatattgcc
aacgcactgcttcaactgcacagcaaccaagtgctccatggagctgttacgctcgaaaat
atttttttgatgaaggatgagccatcgttttgcttattgacaagtagatcacatgctcgg
aaaatggaatcggataaaatcatggattctcgtgctgttgacatttctcagcttggatca
gttctttttcgttgtttaaccggccatgaacacggatctataaatctagacagcttgccg
tttgtgatttcacctgaaggcgtcaagctggctcaaaaaatgatggctcgtaaattctgt
gaatccgttcattatatcatcaatcacacgttcatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCTCATGTTATCACGTCGACTC 618 103 1264 Antisense
GAGTACGGTAAATTCCCGCTTCCAG 50 367 1324 Antisense
TGACCGCTGTGATCGTTCGTGATAT 83 569 1355 Antisense
GATATTGCCAACGCACTGCTTCAAC 86 427 1375 Antisense
GTGCTCCATGGAGCTGTTACGCTCG 638 477 1414 Antisense
GGATGAGCCATCGTTTTGCTTATTG 566 513 1458 Antisense
TGGATTCTCGTGCTGTTGACATTTC 489 549 1526 Antisense
GACATTTCTCAGCTTGGATCAGTTC 649 369 1543 Antisense
AGCTTGCCGTTTGTGATTTCACCTG 683 77 1615 Antisense
TTCACCTGAAGGCGTCAAGCTGGCT 467 685 1632 Antisense
ATATCATCAATCACACGTTCATCAT 541 19 1697 Antisense
Sequence Source Affymetrix Proprietary Database