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[182691_s_at] claustrin like /// claustrin like /// ---

Description F42A6.3 /REP_DB=WormBase Gene ID /WP=CE17055 /TR=O44484 /GB=AAB92048.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 99      6grp_total > 95      4grp_total > 56      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 131
(-0.4)
P 		88.9
(-3)
P 		185.1
(3)
P 		96
(-2.6)
A 		96
B 49.8
(-2.6)
A 		97.1
(-0.3)
P 		167.1
(3)
P 		41
(-3)
A 		126
C 50.9
(-1.6)
A 		109.8
(1.8)
P 		131
(3)
P 		27.6
(-3)
A 		103
avr 77.2
(-1.7) 		98.6
(-0.5) 		161.1
(3) 		54.9
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 853
1 2 3 4 5 6 range
A 87.7
(-2.8)
A 		104.2
(-2.7)
P 		62.6
(-3)
P 		277.6
(-1.5)
P 		627.8
(1)
P 		915.6
(3)
P 		853
B 88.9
(-3)
A 		152.4
(-2.4)
A 		112.3
(-2.8)
P 		280.6
(-1.2)
P 		550
(1.4)
P 		722.4
(3)
P 		634
C 104.3
(-3)
P 		143.3
(-2.7)
A 		130.3
(-2.8)
P 		233.6
(-1.9)
P 		812.8
(3)
P 		416
(-0.4)
P 		709
avr 93.6
(-3) 		133.3
(-2.6) 		101.7
(-2.9) 		263.9
(-1.3) 		663.5
(2.8) 		684.7
(3) 		591
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 47.7
(2.9)
P 		19.3
(-2.1)
P 		48.4
(3)
P 		14.1
(-3)
A 		34
B 15.9
(-1.6)
A 		24
(0.1)
P 		38.7
(3)
P 		8.7
(-3)
A 		30
C 16.8
(-1.2)
A 		31.6
(0.9)
P 		45.7
(3)
P 		4.6
(-3)
A 		41
avr 26.8
(0) 		25
(-0.3) 		44.3
(3) 		9.1
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 256
1 2 3 4 5 6 range
A 16.2
(-2.9)
A 		37.1
(-2.3)
P 		13.6
(-3)
P 		70.4
(-1.4)
P 		189.4
(2)
P 		222.9
(3)
P 		209
B 30.9
(-2.9)
A 		50.7
(-2.4)
A 		27.3
(-3)
P 		74.3
(-1.8)
P 		223.5
(1.9)
P 		269.4
(3)
P 		242
C 38.6
(-2.9)
P 		43.7
(-2.7)
A 		33.2
(-3)
P 		47
(-2.6)
P 		263
(3)
P 		139.3
(-0.2)
P 		230
avr 28.6
(-2.9) 		43.8
(-2.4) 		24.7
(-3) 		63.9
(-1.8) 		225.3
(3) 		210.5
(2.6) 		201
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182691_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10405
Sequence Type Exemplar sequence
Representative Public ID F42A6.3 NCBI
Target Description F42A6.3 /REP_DB=WormBase Gene ID /WP=CE17055 /TR=O44484 /GB=AAB92048.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065377(11), NM_067920(11), NM_060323(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065377 NCBI Caenorhabditis elegans C36A4.5 (C36A4.5) mRNA, complete cds. 11/11 A 
NM_067920 NCBI Caenorhabditis elegans F42A6.3 (F42A6.3) mRNA, complete cds. 11/11 None
NM_060323 NCBI Caenorhabditis elegans F25D7.4 (F25D7.4) mRNA, complete cds. 11/11 A 
SNAP00000011701 ENSEMBL cdna:SNAP chromosome:CEL140:I:10422728:10429980:-1 11/11 None
GENEFINDER00000011706 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10426610:10429980:-1 11/11 None
SNAP00000028395 ENSEMBL cdna:SNAP chromosome:CEL140:III:3844870:3856700:1 11/11 None
GENEFINDER00000028407 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3844870:3848239:1 11/11 None
F25D7.4 ENSEMBL cdna:known chromosome:CEL140:I:10426357:10430599:-1 gene:F25D7.4 11/11 A 
C36A4.5 ENSEMBL cdna:known chromosome:CEL140:III:3844252:3848239:1 gene:C36A4.5 11/11 A 
F42A6.3 ENSEMBL cdna:known chromosome:CEL140:IV:3320009:3324946:1 gene:F42A6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037840 8/11 Cross Hyb Matching Probes None
SNAP00000037841 3/11 Cross Hyb Matching Probes None
GENEFINDER00000037851 3/11 Cross Hyb Matching Probes None
GENEFINDER00000037857 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3320014-3324952(+) 100.0 100.0
chrIII:3844879-3848208(+) 94.25 94.25
chrI:10426571-10429911(-) 94.08 94.08
Public Domain and Genome References
Gene Title claustrin like
claustrin like

Ensembl F25D7.4
C36A4.5
F42A6.3
Entrez Gene 172918 Entrez gene
175498 Entrez gene
185647 Entrez gene
SwissProt Q18494 EMBL-EBI
Q93562 EMBL-EBI
O44484 EMBL-EBI
WormBase CE03073 Wormbase
CE09632 Wormbase
CE17055 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91271 Hypothetical protein C36A4.5 [Caenorhabditis elegans] ref|NP_497778.1| C36A4.5 [Caenorhabditis elegans] 0.0
blast CAB01697 Hypothetical protein F25D7.4 [Caenorhabditis elegans] ref|NP_492724.1| F25D7.4 [Caenorhabditis elegans] 0.0
blast CAB05498 Hypothetical protein F32A7.5a [Caenorhabditis elegans] ref|NP_001021436.1| F32A7.5a [Caenorhabditis elegans] 0.0
blast AAB92048 Hypothetical protein F42A6.3 [Caenorhabditis elegans] ref|NP_500321.1| F42A6.3 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497778.1 1 59-78
C36A4.5 1 59-78
Sequence
Target Sequence 
>C. ELEGANS:182691_S_AT
gagtgaacagatcgatgcctctcatccagaaaatctccacatgccagctgctccaggatc
cgtcgcttcagcgaagccagtcaaattcgcgcgtccatactatttcgacgtggtcacagt
gccaaggaacgagaaattggagacctccgttgaagcagacggtctgcaagagttcatctc
aaaggtgcgctcgagaaatgtgatcctcgcgtcgaaggaaatctccggagagcagctgca
gtcgattctcagaggaaagcaaacatgctcatccatgcaacgtgatcccaacacattcct
ctccgatgctgcacgatttccgccagaagaacgaggagcagttcgccgcgaatcatctgc
agttttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGAACAGATCGATGCCTCTCAT 527 401 1350 Antisense
TGCCTCTCATCCAGAAAATCTCCAC 29 585 1365 Antisense
CAGAAAATCTCCACATGCCAGCTGC 88 205 1376 Antisense
TTCGCGCGTCCATACTATTTCGACG 471 697 1435 Antisense
GAGACCTCCGTTGAAGCAGACGGTC 241 391 1489 Antisense
CAGACGGTCTGCAAGAGTTCATCTC 611 205 1505 Antisense
GAGTTCATCTCAAAGGTGCGCTCGA 515 397 1519 Antisense
GGTGCGCTCGAGAAATGTGATCCTC 669 501 1533 Antisense
TGCAACGTGATCCCAACACATTCCT 440 577 1625 Antisense
CTGCACGATTTCCGCCAGAAGAACG 519 235 1658 Antisense
GCCGCGAATCATCTGCAGTTTTCAA 490 285 1694 Antisense
Sequence Source Affymetrix Proprietary Database