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[182690_at]

Description C50C10.2 /REP_DB=WormBase Gene ID /WP=CE05460 /TR=Q18729 /GB=CAA96608.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 20      6grp_cgc > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 78.8
(-1.7)
A 		64.9
(-2.5)
A 		55.7
(-3)
A 		158.8
(3)
A 		103
B 77.3
(3)
M 		42.1
(0)
A 		6.8
(-3)
A 		76.9
(3)
A 		71
C 71.5
(1.4)
A 		84.2
(3)
A 		35.7
(-3)
A 		79.4
(2.4)
A 		49
avr 75.9
(0.6) 		63.7
(-0.4) 		32.7
(-3) 		105
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 55.5
(1.1)
A 		43.8
(-0.9)
A 		46.5
(-0.4)
A 		31.9
(-3)
A 		33.3
(-2.8)
A 		66.1
(3)
A 		34
B 64.3
(-0.1)
A 		56.5
(-1.2)
A 		84.9
(3)
A 		47
(-2.7)
A 		47.8
(-2.5)
A 		44.7
(-3)
A 		40
C 58
(-1.2)
A 		113.1
(3)
A 		34
(-3)
A 		111.7
(2.9)
P 		56.7
(-1.3)
A 		46.8
(-2)
A 		79
avr 59.3
(0.2) 		71.1
(3) 		55.1
(-0.8) 		63.5
(1.2) 		45.9
(-3) 		52.5
(-1.4) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 28.7
(3)
A 		14.1
(-3)
A 		14.6
(-2.8)
A 		23.2
(0.7)
A 		15
B 24.7
(3)
M 		10.4
(-0.7)
A 		1.6
(-3)
A 		16.4
(0.8)
A 		23
C 23.7
(2.7)
A 		24.2
(3)
A 		12.4
(-3)
A 		13.4
(-2.5)
A 		12
avr 25.7
(3) 		16.2
(-0.5) 		9.5
(-3) 		17.7
(0) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 10.2
(-1.4)
A 		15.6
(2.6)
A 		10.1
(-1.5)
A 		8.1
(-3)
A 		10.1
(-1.5)
A 		16.1
(3)
A 		8
B 22.4
(3)
A 		18.8
(0.8)
A 		20.6
(1.9)
A 		12.5
(-3)
A 		19.4
(1.2)
A 		16.7
(-0.5)
A 		10
C 21.5
(-0)
A 		34.5
(3)
A 		8.6
(-3)
A 		22.5
(0.2)
P 		18.4
(-0.7)
A 		15.7
(-1.4)
A 		26
avr 18
(-0) 		23
(3) 		13.1
(-3) 		14.4
(-2.2) 		16
(-1.2) 		16.2
(-1.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182690_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11470
Sequence Type Exemplar sequence
Representative Public ID C50C10.2 NCBI
Target Description C50C10.2 /REP_DB=WormBase Gene ID /WP=CE05460 /TR=Q18729 /GB=CAA96608.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073131(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073131 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-29) (sru-29) mRNA, complete cds. 11/11 None
SNAP00000003329 ENSEMBL cdna:SNAP chromosome:CEL140:V:9814025:9815201:1 11/11 None
GENEFINDER00000003339 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9814025:9815201:1 11/11 None
C50C10.2 ENSEMBL cdna:known chromosome:CEL140:V:9814043:9815201:1 gene:C50C10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9814042-9815201(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-29
Ensembl C50C10.2
Entrez Gene 183645 Entrez gene
SwissProt Q18729 EMBL-EBI
WormBase CE05460 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96608 Hypothetical protein C50C10.2 [Caenorhabditis elegans] ref|NP_505532.1| Serpentine Receptor, class U family member (sru-29) [Caenorhabditis elegans] 0.0
blast CAA96610 Hypothetical protein C50C10.4 [Caenorhabditis elegans] ref|NP_505534.1| Serpentine Receptor, class U family member (sru-31) [Caenorhabditis elegans] 1.0E-135
blast CAE72260 Hypothetical protein CBG19379 [Caenorhabditis briggsae] 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 3.9E-23
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 3.9E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505532.1 6 22-44,64-86,106-128,148-170,202-224,249-271
C50C10.2 6 22-44,64-86,106-128,148-170,202-224,249-271
SNAP00000003329 6 28-50,70-92,112-134,154-176,208-230,255-277
GENEFINDER00000003339 6 28-50,70-92,112-134,154-176,208-230,255-277
Sequence
Target Sequence 
>C. ELEGANS:182690_AT
gaggtattgccgtcttattatgtatagatttgctattccatttctatttatcgtcccatt
agcattgtcacttttcaatgttactacagtaggattctgcaagcagctcaatcctccatt
cacatttggctccataattttgtacgaaggagaggaatatgcaaagttgaatgctattat
tcatctgtcattttcgagttcaattttctgtgcaaacgctggaatgacaatattcatgtt
ttataagctacggatgactcagaacaatacgacttcggagagaacaaaggaattgacgag
gaaagctgaatattccttattcctggcagttgtttcaagtattgtacctttcattacaaa
tggaatttgttcgactacattcctaatcaaccgcccatattggtatcaaatattgttcat
tcgtccaatcggaaatgactatgagacagttatgatgccatgggttctttatctaacaca
tccaatgttccgccaaaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGTATTGCCGTCTTATTATGTAT 186 403 441 Antisense
CCATTTCTATTTATCGTCCCATTAG 685 269 478 Antisense
GTCCCATTAGCATTGTCACTTTTCA 581 475 493 Antisense
GATTCTGCAAGCAGCTCAATCCTCC 578 429 533 Antisense
TCAATCCTCCATTCACATTTGGCTC 708 631 548 Antisense
TGCTATTATTCATCTGTCATTTTCG 40 581 612 Antisense
GTTCAATTTTCTGTGCAAACGCTGG 74 443 638 Antisense
AATATTCCTTATTCCTGGCAGTTGT 619 173 749 Antisense
TTCGACTACATTCCTAATCAACCGC 278 697 810 Antisense
AATCAACCGCCCATATTGGTATCAA 314 171 825 Antisense
ACACATCCAATGTTCCGCCAAAAGA 224 111 916 Antisense
Sequence Source Affymetrix Proprietary Database