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[182689_at]

Description F56B3.3 /REP_DB=WormBase Gene ID /WP=CE17884 /TR=O45112 /GB=AAK29828.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 24      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 41.1
(-3)
A 		51.6
(-1.8)
A 		92.9
(3)
A 		78.9
(1.4)
A 		52
B 17
(-3)
A 		109.8
(3)
A 		87
(1.5)
A 		83.5
(1.3)
A 		93
C 58.1
(-3)
A 		62.5
(-2.7)
A 		59.1
(-2.9)
A 		146.4
(3)
P 		88
avr 38.7
(-3) 		74.6
(0.4) 		79.7
(0.8) 		102.9
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 101.2
(3)
A 		55.2
(-0.5)
A 		90.1
(2.2)
A 		38.9
(-1.7)
A 		45.3
(-1.2)
A 		22.2
(-3)
A 		79
B 101
(3)
A 		59.9
(-3)
A 		62.4
(-2.6)
A 		90.6
(1.5)
A 		69.9
(-1.5)
A 		98.5
(2.6)
A 		41
C 35.7
(-2.9)
A 		103.7
(3)
A 		34.9
(-3)
A 		99.9
(2.7)
A 		69.8
(0)
A 		94.8
(2.2)
A 		69
avr 79.3
(3) 		72.9
(0.8) 		62.5
(-2.7) 		76.5
(2) 		61.7
(-3) 		71.8
(0.4) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 15
(-1.3)
A 		11.2
(-3)
A 		24.3
(3)
A 		11.5
(-2.9)
A 		13
B 5.4
(-3)
A 		27.1
(3)
A 		20.2
(1.1)
A 		17.8
(0.4)
A 		22
C 19.2
(-1.9)
A 		18
(-3)
A 		20.6
(-0.7)
A 		24.7
(3)
P 		7
avr 13.2
(-3) 		18.8
(1) 		21.7
(3) 		18
(0.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 18.7
(2.6)
A 		19.6
(3)
A 		19.6
(3)
A 		9.9
(-1.1)
A 		13.7
(0.5)
A 		5.4
(-3)
A 		14
B 35.1
(2.6)
A 		19.9
(-1.7)
A 		15.2
(-3)
A 		24
(-0.5)
A 		28.4
(0.7)
A 		36.7
(3)
A 		22
C 13.2
(-1.9)
A 		31.7
(3)
A 		8.9
(-3)
A 		20.1
(-0.1)
A 		22.6
(0.6)
A 		31.7
(3)
A 		23
avr 22.3
(1.6) 		23.7
(2.5) 		14.6
(-3) 		18
(-1) 		21.6
(1.2) 		24.6
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182689_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10846
Sequence Type Exemplar sequence
Representative Public ID F56B3.3 NCBI
Target Description F56B3.3 /REP_DB=WormBase Gene ID /WP=CE17884 /TR=O45112 /GB=AAK29828.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067584(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067584 NCBI Caenorhabditis elegans F56B3.3 (F56B3.3) mRNA, complete cds. 11/11 A 
F56B3.3 ENSEMBL cdna:known chromosome:CEL140:IV:770125:771431:-1 gene:F56B3.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009689 2/11 Cross Hyb Matching Probes None
GENEFINDER00000009692 2/11 Cross Hyb Matching Probes None
GENEFINDER00000041573 6/11 Cross Hyb Matching Probes None
SNAP00000009114 2/11 Cross Hyb Matching Probes None
GENEFINDER00000009127 2/11 Cross Hyb Matching Probes None
SNAP00000016871 2/11 Cross Hyb Matching Probes None
GENEFINDER00000016876 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14052237-14057724(+) 93.95 98.82
chrIV:770130-771437(-) 95.87 100.0
chrIV:4184977-4186122(-) 92.63 97.79
chrV:14041079-14046972(-) 93.81 98.67
Public Domain and Genome References
Gene Title
Ensembl F56B3.3
Entrez Gene 186357 Entrez gene
SwissProt O45112 EMBL-EBI
WormBase CE17884 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29828 Hypothetical protein F56B3.3 [Caenorhabditis elegans] ref|NP_499985.1| F56B3.3 [Caenorhabditis elegans] 9.0E-91
blast CAB03144 Hypothetical protein F58D12.1 [Caenorhabditis elegans] ref|NP_506490.1| F58D12.1 [Caenorhabditis elegans] 7.0E-35
blast AAA98036 Hypothetical protein K08D10.11 [Caenorhabditis elegans] ref|NP_500508.1| K08D10.11 [Caenorhabditis elegans] 5.0E-33
Sequence
Target Sequence 
>C. ELEGANS:182689_AT
ggatttttttctcttcgtcaatagtccacctccaccgccttcttcatccacttcttcgtc
tcgaactcctggattttgcagaaaagggcgacccacctccactgcacaaaatgcgtccgc
tctcttaataactttgttgatatgtatttttttaaagtttaattataataaactttttcc
gaggagtgccctcatgttattttgtagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTTTTTTCTCTTCGTCAATAGT 334 507 300 Antisense
TTTTTCTCTTCGTCAATAGTCCACC 263 675 305 Antisense
CCACCTCCACTGCACAAAATGCGTC 426 273 392 Antisense
CACCTCCACTGCACAAAATGCGTCC 421 201 393 Antisense
AAAATGCGTCCGCTCTCTTAATAAC 443 133 407 Antisense
CGTCCGCTCTCTTAATAACTTTGTT 76 247 413 Antisense
CCGCTCTCTTAATAACTTTGTTGAT 342 261 416 Antisense
TAACTTTGTTGATATGTATTTTTTT 436 635 428 Antisense
TCCGAGGAGTGCCCTCATGTTATTT 663 593 477 Antisense
AGGAGTGCCCTCATGTTATTTTGTA 698 53 481 Antisense
GAGTGCCCTCATGTTATTTTGTAGT 233 399 483 Antisense
Sequence Source Affymetrix Proprietary Database