[Home] | [Total List]

[182688_at]

Description Y39A1A.2 /REP_DB=WormBase Gene ID /WP=CE19120 /TR=Q9XX22 /GB=CAA21018.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 21      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 42.5
(-0.3)
A 		51.4
(1.5)
A 		29.4
(-3)
A 		58.7
(3)
A 		29
B 47.3
(3)
A 		4.9
(-3)
A 		36.1
(1.4)
A 		8.3
(-2.5)
A 		42
C 19.1
(-2.3)
A 		34.7
(0.1)
A 		14.9
(-3)
A 		53.2
(3)
A 		38
avr 36.3
(1.3) 		30.3
(-1.4) 		26.8
(-3) 		40.1
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 37.8
(0.6)
A 		45
(1.4)
A 		16.7
(-1.6)
A 		3.5
(-3)
A 		58.5
(2.8)
A 		60.1
(3)
A 		57
B 32.7
(1.5)
A 		4.9
(-2.7)
A 		2.7
(-3)
A 		5.1
(-2.6)
A 		42.9
(3)
A 		34.1
(1.7)
A 		40
C 24.1
(-0.7)
A 		23.5
(-0.8)
A 		6
(-3)
A 		53.1
(3)
A 		39.5
(1.3)
A 		35.4
(0.7)
A 		47
avr 31.5
(0.6) 		24.5
(-0.5) 		8.5
(-3) 		20.6
(-1.1) 		47
(3) 		43.2
(2.4) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15.5
(3)
A 		11.2
(-0.3)
A 		7.7
(-3)
A 		8.6
(-2.3)
A 		8
B 15.1
(3)
A 		1.2
(-3)
A 		8.4
(0.1)
A 		1.8
(-2.7)
A 		14
C 6.3
(-1.6)
A 		10
(3)
A 		5.2
(-3)
A 		9
(1.8)
A 		5
avr 12.3
(3) 		7.5
(-2) 		7.1
(-2.4) 		6.5
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7
(-0.8)
A 		16
(2.4)
A 		3.6
(-2)
A 		0.9
(-3)
A 		17.6
(3)
A 		14.6
(1.9)
A 		17
B 11.4
(0.9)
A 		1.6
(-2.6)
A 		0.6
(-3)
A 		1.4
(-2.7)
A 		17.4
(3)
A 		12.7
(1.3)
A 		17
C 8.9
(0.9)
A 		7.2
(0)
A 		1.5
(-3)
A 		10.7
(1.9)
A 		12.8
(3)
A 		11.8
(2.5)
A 		11
avr 9.1
(0.1) 		8.3
(-0.3) 		1.9
(-3) 		4.3
(-2) 		15.9
(3) 		13
(1.8) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182688_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6835
Sequence Type Exemplar sequence
Representative Public ID Y39A1A.2 NCBI
Target Description Y39A1A.2 /REP_DB=WormBase Gene ID /WP=CE19120 /TR=Q9XX22 /GB=CAA21018.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066935(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066935 NCBI Caenorhabditis elegans Y39A1A.2 (Y39A1A.2) mRNA, complete cds. 10/11 None
GENEFINDER00000012949 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10602184:10603426:-1 10/11 None
Y39A1A.2 ENSEMBL cdna:known chromosome:CEL140:III:10601817:10603426:-1 gene:Y39A1A.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10602887-10603422(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A1A.2
Entrez Gene 189706 Entrez gene
SwissProt Q9XX22 EMBL-EBI
WormBase CE37800 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21018 Hypothetical protein Y39A1A.2 [Caenorhabditis elegans] ref|NP_499336.2| Y39A1A.2 [Caenorhabditis elegans] 2.0E-98
blast CAA21018 Hypothetical protein Y39A1A.2 [Caenorhabditis elegans] ref|NP_499336.2| Y39A1A.2 [Caenorhabditis elegans] 6.0E-78
blast CAE71383 Hypothetical protein CBG18290 [Caenorhabditis briggsae] 9.0E-45
blast CAE71383 Hypothetical protein CBG18290 [Caenorhabditis briggsae] 9.0E-42
Sequence
Target Sequence 
>C. ELEGANS:182688_AT
gatcgattgttcctatcaaacttgcacaacgatttattcacgttatcgattttcatgcgg
atcctgtgacttgtatcagtgcgtcttctggaaccgtttcctacgattcagtgacgtcac
caaaataccctcaaaatgacgcaattctctgtggccaacaaccgcctccccctcctcaca
aatcgacaattaaaaccgtattcaagaaggagctcatggaaatcccgattccagtggata
ttgagatgtttcgtgcgattcaaaagttagtcaaagatggccgcggaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGATTGTTCCTATCAAACTTGC 3 419 26 Antisense
TTCACGTTATCGATTTTCATGCGGA 672 685 62 Antisense
TCATGCGGATCCTGTGACTTGTATC 603 619 78 Antisense
GACTTGTATCAGTGCGTCTTCTGGA 475 371 93 Antisense
GTCTTCTGGAACCGTTTCCTACGAT 207 469 108 Antisense
TTCCTACGATTCAGTGACGTCACCA 529 697 123 Antisense
GACGTCACCAAAATACCCTCAAAAT 80 379 138 Antisense
CAATTCTCTGTGGCCAACAACCGCC 23 181 167 Antisense
AGGAGCTCATGGAAATCCCGATTCC 45 57 233 Antisense
GATATTGAGATGTTTCGTGCGATTC 179 427 262 Antisense
GTTAGTCAAAGATGGCCGCGGAAGA 435 447 291 Antisense
Sequence Source Affymetrix Proprietary Database