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[182687_at]

Description T21F4.1 /REP_DB=WormBase Gene ID /WP=CE07525 /TR=Q22659 /GB=AAA98709.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 70      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_total > 80      4grp_total > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 115.9
(-1.7)
P 		76.2
(-2.9)
P 		72.7
(-3)
P 		269.5
(3)
P 		197
B 94.4
(-1)
P 		77.5
(-2.4)
P 		69.6
(-3)
P 		145.2
(3)
P 		76
C 131.2
(0.7)
P 		80.3
(-1.5)
P 		46.5
(-3)
P 		185.1
(3)
P 		139
avr 113.8
(-0.8) 		78
(-2.3) 		62.9
(-3) 		199.9
(3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 50
(-3)
A 		102.2
(1.8)
P 		103.2
(1.9)
P 		115.5
(3)
P 		64.3
(-1.7)
P 		99.8
(1.6)
P 		66
B 66.7
(-3)
P 		100
(3)
P 		83.2
(-0)
P 		82.3
(-0.2)
P 		99.8
(3)
P 		74.4
(-1.6)
P 		33
C 134.9
(1.6)
P 		118.4
(0)
P 		90.4
(-2.6)
P 		150.1
(3)
P 		94.7
(-2.2)
P 		85.9
(-3)
P 		64
avr 83.9
(-3) 		106.9
(1.3) 		92.3
(-1.4) 		116
(3) 		86.3
(-2.6) 		86.7
(-2.5) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 42.2
(3)
P 		16.5
(-3)
P 		19
(-2.4)
P 		39.4
(2.3)
P 		26
B 30.1
(2.7)
P 		19.1
(-1.8)
P 		16.1
(-3)
P 		30.9
(3)
P 		15
C 43.4
(3)
P 		23.1
(-1.5)
P 		16.2
(-3)
P 		31.2
(0.3)
P 		27
avr 38.6
(3) 		19.6
(-2.3) 		17.1
(-3) 		33.8
(1.7) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 9.2
(-3)
A 		36.4
(3)
P 		22.5
(-0.1)
P 		29.3
(1.4)
P 		19.4
(-0.8)
P 		24.3
(0.3)
P 		27
B 23.2
(-2.1)
P 		33.3
(0.9)
P 		20.2
(-3)
P 		21.8
(-2.5)
P 		40.5
(3)
P 		27.7
(-0.8)
P 		20
C 50
(3)
P 		36.1
(-0.1)
P 		23
(-3)
P 		30.2
(-1.4)
P 		30.6
(-1.3)
P 		28.8
(-1.7)
P 		27
avr 27.5
(-0.5) 		35.3
(3) 		21.9
(-3) 		27.1
(-0.7) 		30.2
(0.7) 		26.9
(-0.8) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182687_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16194
Sequence Type Exemplar sequence
Representative Public ID T21F4.1 NCBI
Target Description T21F4.1 /REP_DB=WormBase Gene ID /WP=CE07525 /TR=Q22659 /GB=AAA98709.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076547
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000010807 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5630317:5632255:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076547 2/11 Cross Hyb Matching Probes A 
SNAP00000010805 2/11 Cross Hyb Matching Probes None
SNAP00000010806 5/11 Cross Hyb Matching Probes None
T21F4.1 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5630316-5632260(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE68771 Hypothetical protein CBG14711 [Caenorhabditis briggsae] 0.0
blast AAA98709 Hypothetical protein T21F4.1 [Caenorhabditis elegans] ref|NP_508948.2| T21F4.1 [Caenorhabditis elegans] 1.0E-177
blast CAD13686 PROBABLE ARGINASE PROTEIN [Ralstonia solanacearum] ref|NP_518279.1| PROBABLE ARGINASE PROTEIN [Ralstonia solanacearum GMI1000] 4.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR006035 EMBL-EBI Arginase/agmatinase/formiminoglutamase 1.2E-40
Sequence
Target Sequence 
>C. ELEGANS:182687_AT
gaggcacagtacttggtcacaagaaacacaatcggttacggtctctcaatagacttggat
ggatttgatgtttcttacgcaccagctgttggaacaccgtctgcagatggaatcaatgca
ttggagttcatcaaggctcttttgacaattgatttgacaaagttgattgcgactgaaatt
gtggaattcctaccacgattcgatgacacccaaaggaccagcgagcaacttgtgtccagt
ttggtggagtatatttacaagacaaagcaattccaaatcaactcggttaatgaaattgca
caacgccattttcaattccttttaatattattattagttttaatggcacgactggattgt
aaaatttgcttgaaagtttacaaatcaaaccgcgctaaatccacaccaagaatactaacc
aattgtggacatactctttgtgaagcttgtgcggaaactctcttggcacagcacgtgggt
gagataatatgcccgtatgatcgaaaaatcacgattatagatggaggagttgaacaactt
cataaaaactatgcaattcttgcttatattgacgaactgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCACAGTACTTGGTCACAAGAA 466 405 646 Antisense
ACACAATCGGTTACGGTCTCTCAAT 628 109 671 Antisense
CACAACGCCATTTTCAATTCCTTTT 206 195 944 Antisense
GTTTTAATGGCACGACTGGATTGTA 587 445 982 Antisense
TACAAATCAAACCGCGCTAAATCCA 471 639 1024 Antisense
CGCGCTAAATCCACACCAAGAATAC 614 255 1036 Antisense
GACATACTCTTTGTGAAGCTTGTGC 263 371 1073 Antisense
AAGCTTGTGCGGAAACTCTCTTGGC 494 151 1088 Antisense
TCTCTTGGCACAGCACGTGGGTGAG 546 611 1104 Antisense
GGTGAGATAATATGCCCGTATGATC 249 501 1123 Antisense
ATTCTTGCTTATATTGACGAACTGC 669 9 1201 Antisense
Sequence Source Affymetrix Proprietary Database