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[182686_at]

Description ZK488.8 /REP_DB=WormBase Gene ID /WP=CE15365 /TR=O17022 /GB=AAB69955.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 20      6grp_cgc > 88      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 15.6
(-1.9)
A 		5.9
(-3)
A 		9.2
(-2.6)
A 		60.7
(3)
A 		55
B 18.4
(-1.8)
A 		55.5
(3)
A 		9.4
(-3)
A 		24.1
(-1.1)
A 		46
C 33.2
(1.4)
A 		13.7
(-3)
A 		17.5
(-2.1)
A 		40.5
(3)
A 		27
avr 22.4
(-0.9) 		25
(-0.4) 		12
(-3) 		41.8
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 4.1
(-2.8)
A 		20
(0.9)
A 		3.4
(-3)
A 		18.4
(0.5)
A 		3.8
(-2.9)
A 		29.2
(3)
A 		26
B 15.1
(-0.6)
A 		28.7
(2.8)
A 		5.7
(-3)
A 		12.9
(-1.2)
A 		29.5
(3)
A 		10.2
(-1.9)
A 		24
C 22
(-0.5)
A 		2.5
(-3)
A 		16
(-1.3)
A 		23.2
(-0.4)
A 		50.1
(3)
A 		7.2
(-2.4)
A 		48
avr 13.7
(-1.4) 		17.1
(-0.3) 		8.4
(-3) 		18.2
(0) 		27.8
(3) 		15.5
(-0.8) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.7
(0.5)
A 		1.3
(-3)
A 		2.4
(-2.1)
A 		8.9
(3)
A 		8
B 5.9
(-1.1)
A 		13.7
(3)
A 		2.2
(-3)
A 		5.1
(-1.5)
A 		12
C 11
(3)
A 		3.9
(-3)
A 		6.1
(-1.1)
A 		6.8
(-0.5)
A 		7
avr 7.5
(3) 		6.3
(1.2) 		3.6
(-3) 		6.9
(2.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		7.1
(3)
A 		0.7
(-3)
A 		4.7
(0.8)
A 		1.2
(-2.5)
A 		7.1
(3)
A 		6
B 5.2
(-0.8)
A 		9.6
(1.6)
A 		1.4
(-3)
A 		3.4
(-1.9)
A 		12
(3)
A 		3.8
(-1.6)
A 		11
C 8.2
(-0.1)
A 		0.8
(-3)
A 		4.1
(-1.7)
A 		4.7
(-1.5)
A 		16.2
(3)
A 		2.4
(-2.4)
A 		15
avr 4.7
(-1) 		5.8
(-0.1) 		2.1
(-3) 		4.3
(-1.3) 		9.8
(3) 		4.4
(-1.2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182686_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15085
Sequence Type Exemplar sequence
Representative Public ID ZK488.8 NCBI
Target Description ZK488.8 /REP_DB=WormBase Gene ID /WP=CE15365 /TR=O17022 /GB=AAB69955.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK488.8 ENSEMBL cdna:pseudogene chromosome:CEL140:V:604554:606012:-1 gene:ZK488.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016996 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:604553-606012(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK488.8
Sequence
Target Sequence 
>C. ELEGANS:182686_AT
tggacatcacatcgtggtctttacaagatttcttaagacggtgtagttgttggttgggaa
tctttattgcgactgttcgcctcataattattagaaatgtgtccaataatagcaactccg
atactgctacaccaaaatatggaattattttgataatattcgtaagttgtatcagtggcg
tttttcaaggaatgtttcaatatgcaatcaaaatagttgagaatcacaacaacacattat
actctatctgtgcagaacaccaagatatcactaaagatccaaaaatcgaaaagtcaagat
tactgattcaacggaataaggaggataatgaaaaacagttcgggcttcctacgaagctta
taaccttgctcacaattacttcattccttgcggatgctccattggggcggctcctgacag
atcttgtcgtctacttcaacattttgtcaactgtcgtaatactactgcacccagtcatgt
gccttatgatgtcgagccagtatcggatcactgctcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACATCACATCGTGGTCTTTACA 48 547 311 Antisense
GGGAATCTTTATTGCGACTGTTCGC 572 493 366 Antisense
GACTGTTCGCCTCATAATTATTAGA 231 375 381 Antisense
ACTCCGATACTGCTACACCAAAATA 443 97 425 Antisense
ACAGTTCGGGCTTCCTACGAAGCTT 164 93 645 Antisense
ATAACCTTGCTCACAATTACTTCAT 402 25 670 Antisense
ATTACTTCATTCCTTGCGGATGCTC 615 11 685 Antisense
AGATCTTGTCGTCTACTTCAACATT 491 65 729 Antisense
AACTGTCGTAATACTACTGCACCCA 421 143 759 Antisense
ATGTGCCTTATGATGTCGAGCCAGT 612 49 787 Antisense
GAGCCAGTATCGGATCACTGCTCGA 468 385 804 Antisense
Sequence Source Affymetrix Proprietary Database