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[182684_at]

Description ZK488.7 /REP_DB=WormBase Gene ID /WP=CE15363 /TR=O17021 /GB=AAB69954.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 14      6grp_cgc > 20      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 33.4
(-1.3)
A 		15.2
(-3)
A 		34.8
(-1.2)
A 		79.1
(3)
A 		64
B 38.8
(3)
P 		31.2
(-0.8)
A 		26.9
(-3)
A 		30.6
(-1.1)
A 		12
C 51.7
(3)
A 		18.9
(-1.1)
A 		3.8
(-3)
A 		21.5
(-0.8)
A 		48
avr 41.3
(2.3) 		21.8
(-3) 		21.8
(-3) 		43.7
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 100.4
(3)
M 		34.7
(-1.1)
A 		46.6
(-0.3)
A 		51.6
(-0)
A 		18.5
(-2.1)
A 		3.2
(-3)
A 		97
B 54.4
(2.5)
A 		59.3
(3)
A 		50.5
(2)
A 		28.6
(-0.3)
A 		20.2
(-1.2)
A 		3.9
(-3)
A 		55
C 57.8
(3)
A 		50.2
(1.8)
M 		38.2
(0)
A 		50.1
(1.8)
M 		18.6
(-3)
A 		23.5
(-2.3)
A 		39
avr 70.9
(3) 		48.1
(0.7) 		45.1
(0.4) 		43.4
(0.3) 		19.1
(-2.1) 		10.2
(-3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12.2
(3)
A 		3.3
(-3)
A 		9.1
(0.9)
A 		11.6
(2.6)
A 		9
B 12.4
(3)
P 		7.7
(-1.5)
A 		6.2
(-3)
A 		6.5
(-2.7)
A 		6
C 17.1
(3)
A 		5.4
(-1.4)
A 		1.3
(-3)
A 		3.6
(-2.1)
A 		16
avr 13.9
(3) 		5.5
(-3) 		5.5
(-3) 		7.2
(-1.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 18.5
(3)
M 		12.3
(0.9)
A 		10.1
(0.2)
A 		13.1
(1.2)
A 		5.6
(-1.4)
A 		0.8
(-3)
A 		18
B 18.9
(2.7)
A 		19.8
(3)
A 		12.3
(0.5)
A 		7.6
(-1)
A 		8.2
(-0.8)
A 		1.5
(-3)
A 		18
C 21.4
(3)
A 		15.3
(0.6)
M 		9.7
(-1.6)
A 		10.1
(-1.4)
M 		6
(-3)
A 		7.9
(-2.3)
A 		15
avr 19.6
(3) 		15.8
(1.6) 		10.7
(-0.3) 		10.3
(-0.4) 		6.6
(-1.8) 		3.4
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182684_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14974
Sequence Type Exemplar sequence
Representative Public ID ZK488.7 NCBI
Target Description ZK488.7 /REP_DB=WormBase Gene ID /WP=CE15363 /TR=O17021 /GB=AAB69954.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070858(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070858 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-98) (pqn-98) mRNA, complete cds. 11/11 None
SNAP00000016987 ENSEMBL cdna:SNAP chromosome:CEL140:V:603494:604034:-1 11/11 None
GENEFINDER00000016991 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:603494:604034:-1 11/11 None
ZK488.7 ENSEMBL cdna:known chromosome:CEL140:V:603494:604034:-1 gene:ZK488.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:603493-604034(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-98
Ensembl ZK488.7
Entrez Gene 191332 Entrez gene
SwissProt O17021 EMBL-EBI
WormBase CE15363 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69954 Prion-like-(q/n-rich)-domain-bearing protein protein 98 [Caenorhabditis elegans] ref|NP_503259.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-98) [Caenorhabditis elegans] 9.0E-50
blast AAB69957 Prion-like-(q/n-rich)-domain-bearing protein protein 97 [Caenorhabditis elegans] ref|NP_503262.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-97) [Caenorhabditis elegans] 1.0E-44
blast CAE74709 Hypothetical protein CBG22524 [Caenorhabditis briggsae] 3.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 5.3E-63
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503259.1 1 15-37
ZK488.7 1 15-37
SNAP00000016987 1 15-37
GENEFINDER00000016991 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:182684_AT
aattctattctcgtttttactgctctcgtagctattgtttctgctggctccagttggcca
atgttcttgagagatcaaccaagaaatgttcaacaatcttactacacaattgcaagtaat
tcttcgttgactcagaatcagaaggatcaacagctccagcagtgggcacagaccaataat
ctatcgaaccaatacaccgactacacccaacaacgtgatcaacaagaacagcgaatgaat
cagaatacttctcaaattatttcccagttgtcttcagttcaaaaccaactagaatcaatt
ttgaataatgacaatcaaactggagaacagcagcagcaagctcttcaatctcttactaat
caatatccacaagaagtaccagttctgttctatatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTATTCTCGTTTTTACTGCTC 361 177 58 Antisense
TTTTTACTGCTCTCGTAGCTATTGT 297 675 71 Antisense
GCAAGTAATTCTTCGTTGACTCAGA 230 321 169 Antisense
CTCCAGCAGTGGGCACAGACCAATA 90 237 211 Antisense
TAATCTATCGAACCAATACACCGAC 474 635 234 Antisense
CTACACCCAACAACGTGATCAACAA 405 227 258 Antisense
GAATACTTCTCAAATTATTTCCCAG 216 327 300 Antisense
TTATTTCCCAGTTGTCTTCAGTTCA 566 677 314 Antisense
GCAGCAGCAAGCTCTTCAATCTCTT 536 313 387 Antisense
AGCTCTTCAATCTCTTACTAATCAA 522 79 396 Antisense
GAAGTACCAGTTCTGTTCTATATTA 313 337 430 Antisense
Sequence Source Affymetrix Proprietary Database