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[182683_at]

Description ZC250.3 /REP_DB=WormBase Gene ID /WP=CE15157 /TR=O01879 /GB=AAB54235.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 33      6grp_total > 20      4grp_total > 49      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 414
1 2 3 4 range
A 24.9
(-3)
A 		420.2
(3)
P 		390.9
(2.6)
P 		87.7
(-2)
A 		395
B 14.5
(-3)
A 		377.8
(3)
P 		353.7
(2.6)
P 		36.4
(-2.6)
P 		363
C 7.1
(-3)
A 		421
(3)
P 		382.7
(2.4)
P 		29.5
(-2.7)
A 		414
avr 15.5
(-3) 		406.3
(3) 		375.8
(2.5) 		51.2
(-2.5) 		391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 162.7
(-0.1)
P 		254.6
(3)
P 		224.8
(2)
P 		145.6
(-0.7)
P 		130
(-1.2)
P 		76.7
(-3)
M 		178
B 120.5
(-1.3)
P 		250.8
(3)
P 		166.9
(0.2)
P 		135.7
(-0.8)
P 		97.2
(-2.1)
P 		69.1
(-3)
P 		182
C 118.1
(-2)
P 		233.6
(3)
P 		121.8
(-1.9)
P 		210.1
(2)
P 		107.3
(-2.5)
P 		96.1
(-3)
P 		138
avr 133.8
(-1.1) 		246.3
(3) 		171.2
(0.3) 		163.8
(0) 		111.5
(-1.9) 		80.6
(-3) 		166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 9.1
(-3)
A 		91.2
(2.3)
P 		102.2
(3)
P 		12.8
(-2.8)
A 		93
B 4.6
(-3)
A 		93.3
(3)
P 		82
(2.2)
P 		7.8
(-2.8)
P 		89
C 2.3
(-3)
A 		121
(2.4)
P 		133.4
(3)
P 		5
(-2.9)
A 		131
avr 5.3
(-3) 		101.8
(2.8) 		105.9
(3) 		8.5
(-2.8) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 30
(-2.1)
P 		90.6
(3)
P 		49
(-0.5)
P 		36.9
(-1.5)
P 		39.2
(-1.3)
P 		18.7
(-3)
M 		72
B 41.9
(-1.3)
P 		83.5
(3)
P 		40.5
(-1.5)
P 		35.9
(-1.9)
P 		39.5
(-1.6)
P 		25.8
(-3)
P 		58
C 43.8
(-1.1)
P 		71.3
(3)
P 		31
(-3)
P 		42.2
(-1.3)
P 		34.7
(-2.4)
P 		32.2
(-2.8)
P 		40
avr 38.6
(-1.6) 		81.8
(3) 		40.2
(-1.4) 		38.3
(-1.6) 		37.8
(-1.7) 		25.6
(-3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182683_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11503
Sequence Type Exemplar sequence
Representative Public ID ZC250.3 NCBI
Target Description ZC250.3 /REP_DB=WormBase Gene ID /WP=CE15157 /TR=O01879 /GB=AAB54235.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072120(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072120 NCBI Caenorhabditis elegans ZC250.3 (ZC250.3) mRNA, complete cds. 11/11 None
GENEFINDER00000024589 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5797457:5800722:-1 11/11 None
ZC250.3 ENSEMBL cdna:known chromosome:CEL140:V:5797457:5800722:-1 gene:ZC250.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024586 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5797456-5800722(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC250.3
Entrez Gene 191128 Entrez gene
SwissProt O01879 EMBL-EBI
WormBase CE36059 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8643 carbohydrate transport inferred from electronic annotation QuickGO AmiGO
15780 nucleotide-sugar transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
139 Golgi membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5338 nucleotide-sugar transporter activity inferred from electronic annotation QuickGO AmiGO
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54235 Hypothetical protein ZC250.3 [Caenorhabditis elegans] ref|NP_504521.2| ZC250.3 [Caenorhabditis elegans] 0.0
blast CAE64566 Hypothetical protein CBG09317 [Caenorhabditis briggsae] 1.0E-179
blast CAE56616 Hypothetical protein CBG24372 [Caenorhabditis briggsae] 9.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504521.2 9 10-29,42-64,113-135,144-161,176-195,208-227,242-264,269-291,296-318
ZC250.3 9 10-29,42-64,113-135,144-161,176-195,208-227,242-264,269-291,296-318
GENEFINDER00000024589 9 10-29,42-64,113-135,144-161,176-195,208-227,242-264,269-291,296-318
Sequence
Target Sequence 
>C. ELEGANS:182683_AT
cattcagtacgtatactcaccgcctccagcaagtgaagatgttgagcagaacccaatgta
tggattcatggcagtgctcacaatgtgtttcacttcagcatttgcaggtgtctacttgga
aaaagttttgaaatctagcaatgcatcaatttgggttcaaaacattcgtcttgcactcat
cggacttccaatttcatttctttcaatgtggtactatgactgggaaaaaataaatgaaca
aggcgcattccgtggttgggacttcgtggtcgtttgcttgacagtcaccaattcagttgg
tggaatattgatatctgtggtaataaagtacgccgacaacattctaaaagcatatgctca
ggcaagaaattcatctgatgtccaatacaaaaataatatattacagagtatggcaatcat
cggagctgcggttggatcgtggattctttttgattttgctcctggttttatgttccttct
tggcacatttatggtcattgtttcaataattatttataccgcattcccgtatcaagagcc
gg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTCAGTACGTATACTCACCGCCT 643 207 480 Antisense
GTATGGATTCATGGCAGTGCTCACA 481 455 537 Antisense
CAGCATTTGCAGGTGTCTACTTGGA 195 205 575 Antisense
GGTTCAAAACATTCGTCTTGCACTC 322 507 633 Antisense
TGCACTCATCGGACTTCCAATTTCA 606 577 651 Antisense
ACAAGGCGCATTCCGTGGTTGGGAC 446 111 717 Antisense
CGTGGTCGTTTGCTTGACAGTCACC 666 239 744 Antisense
GGAGCTGCGGTTGGATCGTGGATTC 53 521 901 Antisense
GATTCTTTTTGATTTTGCTCCTGGT 459 431 921 Antisense
TTTGCTCCTGGTTTTATGTTCCTTC 645 667 934 Antisense
ACCGCATTCCCGTATCAAGAGCCGG 365 89 997 Antisense
Sequence Source Affymetrix Proprietary Database