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[182681_at]

Description F48B9.4 /REP_DB=WormBase Gene ID /WP=CE04612 /TR=Q20552 /GB=AAA81748.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 61      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 63      6grp_total > 60      4grp_total > 04      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1927
1 2 3 4 range
A 483.6
(-1.9)
P 		227.8
(-3)
P 		237.4
(-3)
P 		1607.2
(3)
P 		1379
B 650.7
(-1.5)
P 		225.1
(-2.8)
P 		162.9
(-3)
P 		2089.9
(3)
P 		1927
C 683.1
(-0.3)
P 		314.6
(-2.2)
P 		167.8
(-3)
P 		1316.3
(3)
P 		1149
avr 605.8
(-1.3) 		255.8
(-2.7) 		189.4
(-3) 		1671.1
(3) 		1482

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 669
1 2 3 4 5 6 range
A 505
(-1.9)
P 		572.7
(-1.1)
P 		922.7
(3)
P 		486.6
(-2.1)
P 		565.6
(-1.2)
P 		407
(-3)
P 		516
B 523.7
(-3)
P 		557.2
(-2.6)
P 		656.6
(-1.4)
P 		1014.9
(3)
P 		586.9
(-2.2)
P 		598.2
(-2.1)
P 		491
C 611.7
(-0.4)
P 		730.6
(0.8)
P 		441.8
(-2.1)
P 		954.4
(3)
P 		345.9
(-3)
P 		486.7
(-1.6)
P 		609
avr 546.8
(-2.1) 		620.2
(-0.7) 		673.7
(0.3) 		818.6
(3) 		499.5
(-3) 		497.3
(-3) 		321
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 408
1 2 3 4 range
A 176.1
(1.1)
P 		49.4
(-3)
P 		62.1
(-2.6)
P 		235.3
(3)
P 		186
B 207.5
(-0.5)
P 		55.6
(-2.7)
P 		37.8
(-3)
P 		445.3
(3)
P 		408
C 226.1
(3)
P 		90.4
(-1.9)
P 		58.5
(-3)
P 		221.9
(2.8)
P 		168
avr 203.2
(0.6) 		65.1
(-2.7) 		52.8
(-3) 		300.8
(3) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 93.1
(-3)
P 		203.7
(3)
P 		200.9
(2.8)
P 		123.4
(-1.4)
P 		170.7
(1.2)
P 		99.1
(-2.7)
P 		111
B 182.2
(-1.7)
P 		185.5
(-1.6)
P 		159.4
(-3)
P 		268.8
(3)
P 		238.5
(1.3)
P 		223.1
(0.5)
P 		109
C 226.7
(3)
P 		222.9
(2.8)
P 		112.4
(-3)
P 		191.9
(1.2)
P 		111.9
(-3)
P 		162.9
(-0.3)
P 		115
avr 167.3
(-1.7) 		204
(3) 		157.6
(-3) 		194.7
(1.8) 		173.7
(-0.9) 		161.7
(-2.5) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182681_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18524
Sequence Type Exemplar sequence
Representative Public ID F48B9.4 NCBI
Target Description F48B9.4 /REP_DB=WormBase Gene ID /WP=CE04612 /TR=Q20552 /GB=AAA81748.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075996
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075996 NCBI Caenorhabditis elegans F48B9.4 (F48B9.4) mRNA, complete cds. None
F48B9.4 ENSEMBL cdna:known chromosome:CEL140:X:2163378:2163761:1 gene:F48B9.4 None
GENEFINDER00000005473 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2163378:2163761:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2163257-2163761(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48B9.4
Entrez Gene 185966 Entrez gene
SwissProt Q20552 EMBL-EBI
WormBase CE30276 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81748 Hypothetical protein F48B9.4 [Caenorhabditis elegans] ref|NP_508397.2| F48B9.4 [Caenorhabditis elegans] 3.0E-38
blast CAE68345 Hypothetical protein CBG14072 [Caenorhabditis briggsae] 2.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508397.2 1 5-27
F48B9.4 1 5-27
GENEFINDER00000005473 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:182681_AT
tcaaattttcctgctcattagccgccccctcgggatcgttttttgttgcatcgtgttgca
tcaggtcatctcaacttgctactttttccagatgagctctcgaatttcggtctccctatt
gctgcttgctgtagtggcaaccatgttcttcacagccaatgttgttgatgcgaccccaag
atcacaaggaaacatgatgcgttacggcaactctcttccagcgtacgccccacatgtctt
ataccgtttttaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAATTTTCCTGCTCATTAGCCGC 8 629 42 Antisense
CCCTCGGGATCGTTTTTTGTTGCAT 496 259 68 Antisense
TGTTGCATCGTGTTGCATCAGGTCA 552 563 85 Antisense
CATCAGGTCATCTCAACTTGCTACT 275 213 100 Antisense
CAACTTGCTACTTTTTCCAGATGAG 58 189 113 Antisense
GATGAGCTCTCGAATTTCGGTCTCC 476 411 132 Antisense
CCCTATTGCTGCTTGCTGTAGTGGC 538 257 155 Antisense
CAACCATGTTCTTCACAGCCAATGT 657 185 179 Antisense
GTTGTTGATGCGACCCCAAGATCAC 635 437 202 Antisense
ATGATGCGTTACGGCAACTCTCTTC 665 45 235 Antisense
CCACATGTCTTATACCGTTTTTACA 330 273 271 Antisense
Sequence Source Affymetrix Proprietary Database