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[182680_at]

Description C50E3.4 /REP_DB=WormBase Gene ID /WP=CE08897 /TR=Q22926 /GB=AAB04881.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 55      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 181
(3)
P 		121.9
(-1.9)
A 		108.1
(-3)
A 		162.1
(1.4)
A 		73
B 239.6
(3)
P 		113.7
(-2.8)
A 		173.5
(-0.1)
A 		109.9
(-3)
A 		130
C 211.5
(3)
P 		74.9
(-3)
A 		147.3
(0.2)
A 		125.3
(-0.8)
A 		137
avr 210.7
(3) 		103.5
(-3) 		143
(-0.8) 		132.4
(-1.4) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 296
1 2 3 4 5 6 range
A 95.9
(-3)
A 		133.4
(-2.2)
A 		175.7
(-1.2)
P 		177.4
(-1.2)
P 		270.2
(0.9)
P 		363
(3)
P 		267
B 140.4
(-2)
A 		98.9
(-3)
A 		162.2
(-1.5)
A 		191.7
(-0.8)
A 		243.9
(0.4)
P 		357.5
(3)
P 		259
C 126.4
(-2.4)
A 		98.5
(-3)
A 		151.4
(-1.9)
A 		148.2
(-2)
A 		194.9
(-1)
P 		391.4
(3)
P 		293
avr 120.9
(-2.8) 		110.3
(-3) 		163.1
(-1.8) 		172.4
(-1.6) 		236.3
(-0.1) 		370.6
(3) 		260
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 65.9
(3)
P 		26.5
(-2.6)
A 		28.3
(-2.3)
A 		23.7
(-3)
A 		42
B 76.4
(3)
P 		28.1
(-2.5)
A 		40.2
(-1.1)
A 		23.4
(-3)
A 		53
C 70
(3)
P 		21.5
(-3)
A 		51.3
(0.7)
A 		21.1
(-3)
A 		49
avr 70.8
(3) 		25.4
(-2.7) 		39.9
(-0.9) 		22.7
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 17.7
(-3)
A 		47.5
(-0.5)
A 		38.3
(-1.3)
P 		45
(-0.7)
P 		81.5
(2.4)
P 		88.4
(3)
P 		71
B 48.8
(-2)
A 		32.9
(-3)
A 		39.4
(-2.6)
A 		50.8
(-1.9)
A 		99.1
(1)
P 		133.3
(3)
P 		100
C 46.9
(-2)
A 		30
(-3)
A 		38.5
(-2.5)
A 		29.8
(-3)
A 		63.1
(-1)
P 		131
(3)
P 		101
avr 37.8
(-2.9) 		36.8
(-3) 		38.7
(-2.9) 		41.9
(-2.6) 		81.2
(0.3) 		117.6
(3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182680_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11438
Sequence Type Exemplar sequence
Representative Public ID C50E3.4 NCBI
Target Description C50E3.4 /REP_DB=WormBase Gene ID /WP=CE08897 /TR=Q22926 /GB=AAB04881.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072556(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072556 NCBI Caenorhabditis elegans C50E3.5 (C50E3.5) mRNA, complete cds. 11/11 A 
SNAP00000028529 ENSEMBL cdna:SNAP chromosome:CEL140:V:7595760:7597215:1 11/11 None
GENEFINDER00000028561 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7595977:7597215:1 11/11 None
C50E3.5 ENSEMBL cdna:known chromosome:CEL140:V:7590588:7597330:1 gene:C50E3.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7595606-7597216(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50E3.5
Entrez Gene 183656 Entrez gene
SwissProt Q22924 EMBL-EBI
WormBase CE30738 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504957 C50E3.5 [Caenorhabditis elegans] gb|AAB04881.2| Hypothetical protein C50E3.5 [Caenorhabditis elegans] 0.0
blast CAE74650 Hypothetical protein CBG22447 [Caenorhabditis briggsae] 1.0E-107
blast T29670 hypothetical protein C50E3.5 - Caenorhabditis elegans 3.0E-53
Sequence
Target Sequence 
>C. ELEGANS:182680_AT
atctcttgacttttttaggctctggaattcttgctcaatacacatgtagtaccgacaatc
gtctcaacttcctctcccatcaacatcgacgtcactcggcgcttttcaacaagcttttcg
aagtgaaaatgctccaaactcggcaatcagaagatccagaaacggcagaaataccgattg
gacaccctcctacatcatttcatcctcttcttccaacagccaagaagataactcacgaaa
agaaactttccgatgtgaatttaacgaatggtctacagtatcctgtacaaattctaccac
agaaacatttgaaaattggtggaaatgaagtgacgactgaaaatggaatgggaaggatgt
tagtggattatgcgtgttttatgacacaaatcggacggcaacccaatgcaaaagctgttg
atcaagtagtcagactcctctggccagaaagtgctctctcgataccagctgatatccttg
gcgaccacaaaatcggacagctgcccaatgaccacctcgatgtaatattccaacatgttc
acgaggaactgcacaacacctcgattgccaaaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCTTGACTTTTTTAGGCTCTGG 642 31 407 Antisense
AGTACCGACAATCGTCTCAACTTCC 165 63 454 Antisense
CACTCGGCGCTTTTCAACAAGCTTT 653 195 499 Antisense
GAAAATGCTCCAAACTCGGCAATCA 8 355 531 Antisense
GCAGAAATACCGATTGGACACCCTC 379 309 571 Antisense
CACAAATCGGACGGCAACCCAATGC 619 189 791 Antisense
TCAAGTAGTCAGACTCCTCTGGCCA 213 633 828 Antisense
GCTGATATCCTTGGCGACCACAAAA 474 295 874 Antisense
CAAAATCGGACAGCTGCCCAATGAC 198 191 894 Antisense
GACCACCTCGATGTAATATTCCAAC 400 383 916 Antisense
GCACAACACCTCGATTGCCAAAACC 633 317 957 Antisense
Sequence Source Affymetrix Proprietary Database