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[182679_at]

Description T22E7.1 /REP_DB=WormBase Gene ID /WP=CE13958 /TR=Q9N5D7 /GB=AAF39970.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      4grp_high_8_8 > 53      6grp_highest_nonorm > 71      6grp_total > 31      4grp_total > 51      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 362
1 2 3 4 range
A 213.9
(-0.9)
P 		410.7
(3)
P 		231.8
(-0.6)
P 		111.2
(-3)
A 		300
B 250.8
(1.3)
P 		327.7
(3)
P 		318.7
(2.8)
P 		49.2
(-3)
A 		279
C 285
(0.5)
P 		386.9
(2.6)
P 		407.9
(3)
P 		117.1
(-3)
P 		291
avr 249.9
(0.3) 		375.1
(3) 		319.5
(1.8) 		92.5
(-3) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 350
1 2 3 4 5 6 range
A 305.4
(0.6)
P 		279.4
(0.1)
P 		425.9
(3)
P 		274.7
(-0)
P 		188.2
(-1.8)
P 		127.4
(-3)
P 		299
B 347.6
(0.5)
P 		365
(0.8)
P 		476.9
(3)
P 		361.3
(0.7)
P 		300.5
(-0.5)
P 		172.1
(-3)
P 		305
C 296.3
(0.3)
P 		431.5
(3)
P 		416.4
(2.7)
P 		273.2
(-0.1)
P 		201.6
(-1.5)
P 		127.3
(-3)
P 		304
avr 316.4
(0.5) 		358.6
(1.4) 		439.7
(3) 		303.1
(0.2) 		230.1
(-1.2) 		142.3
(-3) 		297
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 77.9
(2.1)
P 		89.1
(3)
P 		60.6
(0.7)
P 		16.3
(-3)
A 		73
B 80
(2.9)
P 		80.9
(3)
P 		73.9
(2.4)
P 		10.5
(-3)
A 		70
C 94.3
(0.7)
P 		111.2
(1.5)
P 		142.1
(3)
P 		19.7
(-3)
P 		122
avr 84.1
(2.3) 		93.7
(3) 		92.2
(2.9) 		15.5
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 56.3
(-0.8)
P 		99.4
(3)
P 		92.8
(2.4)
P 		69.7
(0.4)
P 		56.8
(-0.7)
P 		31
(-3)
P 		68
B 121
(2.9)
P 		121.5
(2.9)
P 		115.8
(2.3)
P 		95.7
(0.3)
P 		122.1
(3)
P 		64.2
(-3)
P 		58
C 109.8
(1.5)
P 		131.7
(3)
P 		106
(1.3)
P 		54.9
(-2.2)
P 		65.2
(-1.5)
P 		42.6
(-3)
P 		89
avr 95.7
(1.2) 		117.5
(3) 		104.9
(1.9) 		73.4
(-0.7) 		81.4
(-0) 		45.9
(-3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182679_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.808
Sequence Type Exemplar sequence
Representative Public ID T22E7.1 NCBI
Target Description T22E7.1 /REP_DB=WormBase Gene ID /WP=CE13958 /TR=Q9N5D7 /GB=AAF39970.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059275(11), NM_170869(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059275 NCBI Caenorhabditis elegans T22E7.1a (T22E7.1) mRNA, complete cds. 11/11 A 
NM_170869 NCBI Caenorhabditis elegans T22E7.1b (T22E7.1) mRNA, complete cds. 11/11 A 
T22E7.1a ENSEMBL cdna:known chromosome:CEL140:I:5777099:5781723:1 gene:T22E7.1 11/11 A 
T22E7.1b ENSEMBL cdna:known chromosome:CEL140:I:5777156:5781740:1 gene:T22E7.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5778555-5779792(+) 100.0 100.0
Public Domain and Genome References
Ensembl T22E7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39970 Hypothetical protein T22E7.1a [Caenorhabditis elegans] ref|NP_491676.2| T22E7.1a [Caenorhabditis elegans] 0.0
blast AAO21400 Hypothetical protein T22E7.1b [Caenorhabditis elegans] ref|NP_740857.2| T22E7.1b [Caenorhabditis elegans] 1.0E-170
blast AAO21400 Hypothetical protein T22E7.1b [Caenorhabditis elegans] ref|NP_740857.2| T22E7.1b [Caenorhabditis elegans] 1.0E-168
blast AAF39970 Hypothetical protein T22E7.1a [Caenorhabditis elegans] ref|NP_491676.2| T22E7.1a [Caenorhabditis elegans] 1.0E-168
blast CAE67386 Hypothetical protein CBG12871 [Caenorhabditis briggsae] 1.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR000483 EMBL-EBI Cysteine-rich flanking region, C-terminal 8.7E-5
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.17
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491676.2 1 291-310
T22E7.1a 1 291-310
Sequence
Target Sequence 
>C. ELEGANS:182679_AT
cggggcaagaattcactacacgatttaaaaaaggatcaagactatctagaggtggacact
ctgaatgtacatcaggcaaaacttgacttaacagatgatctcgttccggatggaataaat
ttatcccatctcacattacttaatgccactgataaccaaataactcgaattggacgccgc
ggatttgataagattcgaaatatgcagtttttatatttatcaattaatcaaatttcacat
tcacaaccggatccattccaggctcttgaaaagttgaaacgtctggaaatgaacgatgca
ttggatggaaatatggaagagaaatcagatatgcttcgaaatttcttccattcgaaaaat
agttttgttcatttggcacagattgaattgaacaagaataagattgaaggaatctatcca
aaaacattttgtggtattcaaggacttcaaagacttgaattatcgaataatcgaattcca
tcttttgactttgcaagaacttgtttgaaggaactcaaggctcttatgttggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGGGCAAGAATTCACTACACGATT 601 241 91 Antisense
AGGTGGACACTCTGAATGTACATCA 205 59 140 Antisense
AACAGATGATCTCGTTCCGGATGGA 315 137 180 Antisense
AAATTTATCCCATCTCACATTACTT 103 117 207 Antisense
ATAACTCGAATTGGACGCCGCGGAT 19 25 250 Antisense
GGACGCCGCGGATTTGATAAGATTC 399 523 262 Antisense
ATTTCACATTCACAACCGGATCCAT 705 15 322 Antisense
GATCCATTCCAGGCTCTTGAAAAGT 630 415 340 Antisense
ATATGCTTCGAAATTTCTTCCATTC 454 21 419 Antisense
TCGAATTCCATCTTTTGACTTTGCA 164 601 561 Antisense
AGGAACTCAAGGCTCTTATGTTGGC 436 55 599 Antisense
Sequence Source Affymetrix Proprietary Database