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[182678_at]

Description F08F1.4 /REP_DB=WormBase Gene ID /WP=CE27928 /TR=O17385 /GB=AAB71304.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 10      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 6.2
(-3)
A 		5.7
(-3)
A 		10.8
(-2.6)
A 		90.6
(3)
A 		85
B 33.6
(0.5)
A 		13.4
(-2.2)
A 		6.9
(-3)
A 		53.3
(3)
A 		46
C 6.1
(-3)
A 		41.7
(-0.7)
A 		26.1
(-1.7)
A 		97.7
(3)
A 		92
avr 15.3
(-2.9) 		20.3
(-2.5) 		14.6
(-3) 		80.5
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 33.8
(3)
A 		6.8
(-3)
A 		11
(-2.1)
A 		18
(-0.5)
A 		7.8
(-2.8)
A 		21
(0.2)
A 		27
B 10
(-2.1)
A 		27.6
(3)
A 		7.5
(-2.8)
A 		6.7
(-3)
A 		22.7
(1.6)
A 		13.3
(-1.1)
A 		21
C 4.3
(-2.8)
A 		35
(2.2)
A 		39.7
(3)
A 		6.6
(-2.4)
A 		11.7
(-1.6)
A 		2.8
(-3)
A 		37
avr 16
(-0.4) 		23.1
(3) 		19.4
(1.3) 		10.4
(-3) 		14.1
(-1.3) 		12.4
(-2.1) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.2
(-2.5)
A 		1.2
(-3)
A 		2.8
(-2.2)
A 		13.3
(3)
A 		12
B 10.7
(2.6)
A 		3.3
(-2)
A 		1.6
(-3)
A 		11.4
(3)
A 		10
C 2
(-3)
A 		12
(1.1)
A 		9.1
(-0.1)
A 		16.5
(3)
A 		15
avr 5
(-2.7) 		5.5
(-2.3) 		4.5
(-3) 		13.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 6.2
(3)
A 		2.4
(-3)
A 		2.4
(-3)
A 		4.6
(0.5)
A 		2.4
(-3)
A 		5.1
(1.3)
A 		4
B 3.5
(-1.6)
A 		9.2
(3)
A 		1.8
(-3)
A 		1.8
(-3)
A 		9.2
(3)
A 		4.9
(-0.5)
A 		7
C 1.6
(-2.6)
A 		10.7
(3)
A 		10.1
(2.6)
A 		1.3
(-2.8)
A 		3.8
(-1.2)
A 		0.9
(-3)
A 		10
avr 3.8
(-1.5) 		7.4
(3) 		4.8
(-0.3) 		2.6
(-3) 		5.1
(0.1) 		3.6
(-1.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182678_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17233
Sequence Type Exemplar sequence
Representative Public ID F08F1.4 NCBI
Target Description F08F1.4 /REP_DB=WormBase Gene ID /WP=CE27928 /TR=O17385 /GB=AAB71304.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029366, NM_001029365
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F08F1.4b.1 ENSEMBL cdna:known chromosome:CEL140:X:8411635:8413949:1 gene:F08F1.4 None
NM_001029365 NCBI Caenorhabditis elegans F08F1.4a (F08F1.4) mRNA, complete cds. None
F08F1.4a ENSEMBL cdna:known chromosome:CEL140:X:8411635:8414002:1 gene:F08F1.4 None
GENEFINDER00000012398 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8413447:8413943:1 None
SNAP00000012384 ENSEMBL cdna:SNAP chromosome:CEL140:X:8413577:8413943:1 None
F08F1.4b.2 ENSEMBL cdna:known chromosome:CEL140:X:8411635:8414016:1 gene:F08F1.4 None
NM_001029366 NCBI Caenorhabditis elegans F08F1.4b (F08F1.4) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8411633-8415145(+) 100.0 100.0
Public Domain and Genome References
Ensembl F08F1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71304 Hypothetical protein F08F1.4a [Caenorhabditis elegans] ref|NP_001024536.1| F08F1.4a [Caenorhabditis elegans] 1.0E-106
blast AAP68945 Hypothetical protein F08F1.4b [Caenorhabditis elegans] ref|NP_001024537.1| F08F1.4b [Caenorhabditis elegans] 2.0E-79
blast AAB71304 Hypothetical protein F08F1.4a [Caenorhabditis elegans] ref|NP_001024536.1| F08F1.4a [Caenorhabditis elegans] 3.0E-65
blast AAP68945 Hypothetical protein F08F1.4b [Caenorhabditis elegans] ref|NP_001024537.1| F08F1.4b [Caenorhabditis elegans] 4.0E-65
Sequence
Target Sequence 
>C. ELEGANS:182678_AT
aactggcatagcatcaagtgtcgaaatcaaatttgttcgaaatgtgtatatgaattgtac
tttgaatacaatataattaatcggaaaaattctttctctttccagctgcttcaaaaaaat
ttcatcaacgcctcccaagtttccgatgagtcatcaatgttcattctgccacaaacaact
gacatctcacattttttgattaatatgaattcttccctatttttcacttttaatgttctt
agtttaattttaatgcaacaaactgttgtggcaactggaaaacaatgtatggatattatc
accatccgtaacaacgaaaatgacacgataactcccaaaattttttattatgaaggagca
ggacagcaaatcgctgaaatatcgtgtgcaggagagacgagtggtgttgttgaattgatt
tcaaatgatagatcacttggagtaattgaagatagatcgcataaagccatttgccgttta
ggaagcagtttccaattttcagaatattcggaaactgccggtttttgcttttccattcga
cacttgattgttttcagctgtgttatccacgcagaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGGCATAGCATCAAGTGTCGAA 197 143 34 Antisense
TTTCTCTTTCCAGCTGCTTCAAAAA 37 673 126 Antisense
GCCTCCCAAGTTTCCGATGAGTCAT 335 281 163 Antisense
GATGAGTCATCAATGTTCATTCTGC 355 411 178 Antisense
GTTCATTCTGCCACAAACAACTGAC 683 443 192 Antisense
ACAACTGACATCTCACATTTTTTGA 368 113 208 Antisense
TGAATTCTTCCCTATTTTTCACTTT 607 575 239 Antisense
TATTCGGAAACTGCCGGTTTTTGCT 159 655 538 Antisense
TCCATTCGACACTTGATTGTTTTCA 681 591 565 Antisense
ATTGTTTTCAGCTGTGTTATCCACG 538 3 580 Antisense
TCAGCTGTGTTATCCACGCAGAATC 390 625 587 Antisense
Sequence Source Affymetrix Proprietary Database