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[182677_at]

Description K07E3.2 /REP_DB=WormBase Gene ID /WP=CE04719 /TR=Q21287 /GB=AAC69099.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 44      4grp_highest_8_8 > 52      4grp_high_8_8 > 24      6grp_highest_nonorm > 62      6grp_total > 40      4grp_total > 39      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 522
1 2 3 4 range
A 758.3
(3)
P 		400.3
(-3)
P 		405.5
(-2.9)
P 		500.7
(-1.3)
P 		358
B 896.8
(3)
P 		422.2
(-2.5)
P 		374.6
(-3)
P 		527.7
(-1.2)
P 		522
C 894.9
(3)
P 		385.3
(-3)
P 		424.6
(-2.5)
P 		539
(-1.2)
P 		510
avr 850
(3) 		402.6
(-3) 		401.6
(-3) 		522.5
(-1.4) 		448

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 404
1 2 3 4 5 6 range
A 487.8
(0.1)
P 		595.6
(3)
P 		559.7
(2)
P 		546.4
(1.7)
P 		373.9
(-3)
P 		476.5
(-0.2)
P 		222
B 480.4
(-1.2)
P 		613.9
(1.1)
P 		725.1
(3)
P 		586.4
(0.6)
P 		378.6
(-3)
P 		455
(-1.7)
P 		347
C 535.8
(0.2)
P 		720.2
(3)
P 		544.3
(0.4)
P 		692.1
(2.6)
P 		320.7
(-3)
P 		526.8
(0.1)
P 		400
avr 501.3
(0) 		643.2
(3) 		609.7
(2.3) 		608.3
(2.3) 		357.7
(-3) 		486.1
(-0.3) 		286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 276.1
(3)
P 		86.9
(-2.6)
P 		106
(-2)
P 		73.3
(-3)
P 		203
B 286
(3)
P 		104.3
(-2.5)
P 		86.8
(-3)
P 		112.5
(-2.2)
P 		199
C 296.2
(3)
P 		110.8
(-2.4)
P 		148
(-1.3)
P 		90.9
(-3)
P 		205
avr 286.1
(3) 		100.7
(-2.7) 		113.6
(-2.3) 		92.2
(-3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 89.9
(-3)
P 		211.8
(3)
P 		121.9
(-1.4)
P 		138.6
(-0.6)
P 		112.8
(-1.9)
P 		116
(-1.7)
P 		122
B 167.1
(-1.4)
P 		204.4
(3)
P 		176.1
(-0.4)
P 		155.3
(-2.8)
P 		153.8
(-3)
P 		169.7
(-1.1)
P 		51
C 198.6
(1.9)
P 		219.8
(3)
P 		138.5
(-1.2)
P 		139.2
(-1.2)
P 		103.8
(-3)
P 		176.4
(0.8)
P 		116
avr 151.9
(-1.1) 		212
(3) 		145.5
(-1.5) 		144.4
(-1.6) 		123.5
(-3) 		154
(-0.9) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182677_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16824
Sequence Type Exemplar sequence
Representative Public ID K07E3.2 NCBI
Target Description K07E3.2 /REP_DB=WormBase Gene ID /WP=CE04719 /TR=Q21287 /GB=AAC69099.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076964(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076964 NCBI Caenorhabditis elegans K07E3.2 (K07E3.2) mRNA, complete cds. 11/11 None
SNAP00000041518 ENSEMBL cdna:SNAP chromosome:CEL140:X:8104248:8107346:1 11/11 None
GENEFINDER00000041521 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8104248:8107346:1 11/11 None
K07E3.2 ENSEMBL cdna:known chromosome:CEL140:X:8102730:8107497:1 gene:K07E3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8102728-8107345(+) 94.07 100.0
Public Domain and Genome References
Gene Title
Ensembl K07E3.2
Entrez Gene 187111 Entrez gene
SwissProt Q21287 EMBL-EBI
WormBase CE04719 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69099 Hypothetical protein K07E3.2 [Caenorhabditis elegans] ref|NP_509365.1| K07E3.2 [Caenorhabditis elegans] 0.0
blast CAE70351 Hypothetical protein CBG16900 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182677_AT
gcctccgtcagcaaaactcatactgggactgcctccaaattgcaaaaagtaggggattcg
aaattccaaaagatcgattaaaagaacggttgatccctgatgcagaatccgaaagaaatg
aaggttttgcgatagtttataaaaagctgaagaagctagatgctatattctaccccgttg
tgctagatcttcctgtagccgctttcaaagatttcagagaagaaaatatggaactattca
aagatttgcccgtcgagagtcaagaaagaatatgtgaaattaaggaataccatgaaaatg
caagaaaggctgctcgcgacgaatatgaacggcggaaaagagaagaaaaagaaagagcag
atatgaagaagaagcaaaaagaagacgaagaagaagctatgaaaaatcaagagcaaagat
cacacttctttatgatagacgattttgaatcatctcattttggaagattcaatgggaacg
agaaagattccgataatcaagaatcagaaagttctgatagtccttataatccatctagtt
tcatggcagaggacactttatcaatgcaggattcatcgtttccaactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTCCGTCAGCAAAACTCATACTG 354 281 1901 Antisense
CATACTGGGACTGCCTCCAAATTGC 549 197 1919 Antisense
GAACGGTTGATCCCTGATGCAGAAT 57 349 1984 Antisense
AGCTAGATGCTATATTCTACCCCGT 361 79 2054 Antisense
TATTCTACCCCGTTGTGCTAGATCT 629 661 2066 Antisense
ATCTTCCTGTAGCCGCTTTCAAAGA 299 31 2087 Antisense
AAGATTTGCCCGTCGAGAGTCAAGA 392 155 2141 Antisense
GAAAGGCTGCTCGCGACGAATATGA 417 361 2204 Antisense
AGTCCTTATAATCCATCTAGTTTCA 315 61 2419 Antisense
GTTTCATGGCAGAGGACACTTTATC 701 449 2438 Antisense
ATGCAGGATTCATCGTTTCCAACTG 248 41 2464 Antisense
Sequence Source Affymetrix Proprietary Database