[Home] | [Total List]

[182676_at]

Description T27C5.10 /REP_DB=WormBase Gene ID /WP=CE16504 /TR=O45385 /GB=CAB04871.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 30.8
(-2.2)
A 		78.8
(3)
A 		47.6
(-0.4)
A 		23
(-3)
A 		56
B 59.5
(0)
A 		49.4
(-2.2)
A 		72.7
(3)
A 		45.9
(-3)
P 		27
C 55.2
(2.9)
A 		55.6
(3)
A 		28.4
(-3)
A 		55.7
(3)
M 		27
avr 48.5
(-0.9) 		61.3
(3) 		49.6
(-0.5) 		41.5
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 73.7
(3)
P 		42.2
(-1)
A 		44
(-0.7)
P 		26
(-3)
A 		53
(0.4)
A 		33.2
(-2.1)
A 		48
B 20.6
(-1.8)
A 		36.5
(2.5)
A 		16
(-3)
A 		38.5
(3)
A 		31.8
(1.2)
A 		21.6
(-1.5)
A 		23
C 16.1
(-2.9)
A 		53.9
(3)
A 		39.6
(0.8)
A 		15.5
(-3)
A 		18.1
(-2.6)
A 		44.2
(1.5)
A 		38
avr 36.8
(0.5) 		44.2
(3) 		33.2
(-0.8) 		26.7
(-3) 		34.3
(-0.4) 		33
(-0.8) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 11.2
(0.4)
A 		17.1
(3)
A 		12.4
(0.9)
A 		3.4
(-3)
A 		14
B 19
(3)
A 		12.2
(-1.4)
A 		16.8
(1.6)
A 		9.8
(-3)
P 		9
C 18.3
(3)
A 		16
(1.4)
A 		9.9
(-2.7)
A 		9.4
(-3)
M 		9
avr 16.2
(3) 		15.1
(2.2) 		13
(0.8) 		7.5
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 13.6
(1.5)
P 		15
(2.4)
A 		9.6
(-1.1)
P 		6.6
(-3)
A 		16
(3)
A 		8.1
(-2)
A 		9
B 7.2
(-0.8)
A 		12.1
(2.5)
A 		3.9
(-3)
A 		10.2
(1.2)
A 		12.9
(3)
A 		8.1
(-0.2)
A 		9
C 6
(-1.7)
A 		16.4
(3)
A 		10.1
(0.2)
A 		3.1
(-3)
A 		5.9
(-1.7)
A 		14.8
(2.3)
A 		13
avr 8.9
(-1.3) 		14.5
(3) 		7.9
(-2) 		6.6
(-3) 		11.6
(0.8) 		10.3
(-0.2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182676_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12547
Sequence Type Exemplar sequence
Representative Public ID T27C5.10 NCBI
Target Description T27C5.10 /REP_DB=WormBase Gene ID /WP=CE16504 /TR=O45385 /GB=CAB04871.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075008(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075008 NCBI Caenorhabditis elegans T27C5.10 (T27C5.10) mRNA, complete cds. 11/11 None
T27C5.10 ENSEMBL cdna:known chromosome:CEL140:V:17431940:17432743:-1 gene:T27C5.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17431939-17432743(-) 60.1 100.0
Public Domain and Genome References
Gene Title
Ensembl T27C5.10
Entrez Gene 188989 Entrez gene
SwissProt O45385 EMBL-EBI
WormBase CE16504 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04871 Hypothetical protein T27C5.10 [Caenorhabditis elegans] emb|CAB04151.1| Hypothetical protein T27C5.10 [Caenorhabditis elegans] ref|NP_507409.1| T27C5.10 [Caenorhabditis elegans] 1.0E-106
blast CAB04370 Hypothetical protein F40D4.8 [Caenorhabditis elegans] ref|NP_507344.1| Serpentine Receptor, class W family member (srw-51) [Caenorhabditis elegans] 2.0E-54
blast CAA18358 Hypothetical protein H24D24.2 [Caenorhabditis elegans] ref|NP_506995.1| Serpentine Receptor, class W family member (srw-58) [Caenorhabditis elegans] 1.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507409.1 2 21-43,53-75
T27C5.10 2 21-43,53-75
Sequence
Target Sequence 
>C. ELEGANS:182676_AT
ttctgaacgtgctccatttgcttgtgcttttccgaaaatctatgaggcaactgacaatta
atatatttatgatcggaattgcagtttgtgatttttcccaaatgatttcatttgttgtag
ttataacaacacaattttacataaattacaaaacaactcaaatttctccagactgttatc
cacctcaatcttatgttgagtacaaaataaatcacatttttacatttatttcaaacgtgt
cgccaaagcttgcagtctggctgggaggagacacctgccgccaacctgcccgcctcatgc
cggcctctcgcctcattcctgcattctgtcttgaaatcaagggcttggtgtcagcatcac
atagtgcgacgttcgtgcgtggttgctacgcagcggccgacacgtttcgggttccgcgcc
gcactatacaagaggcacggctcgcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGAACGTGCTCCATTTGCTTGT 112 693 113 Antisense
ATTTGCTTGTGCTTTTCCGAAAATC 401 17 128 Antisense
AAACAACTCAAATTTCTCCAGACTG 205 129 263 Antisense
ACTGTTATCCACCTCAATCTTATGT 400 97 284 Antisense
GTCGCCAAAGCTTGCAGTCTGGCTG 496 473 351 Antisense
TCTGGCTGGGAGGAGACACCTGCCG 532 607 368 Antisense
CTCATTCCTGCATTCTGTCTTGAAA 661 229 424 Antisense
AAGGGCTTGGTGTCAGCATCACATA 583 159 451 Antisense
GCATCACATAGTGCGACGTTCGTGC 501 309 466 Antisense
GTTCGTGCGTGGTTGCTACGCAGCG 288 443 483 Antisense
ACTATACAAGAGGCACGGCTCGCGG 204 103 535 Antisense
Sequence Source Affymetrix Proprietary Database