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[182674_at] 7TM chemoreceptor, srab family

Description C36C5.7 /REP_DB=WormBase Gene ID /WP=CE08596 /TR=O16400 /GB=AAB65930.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 03      6grp_cgc > 92      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 1.9
(-3)
A 		2.4
(-3)
A 		3
(-2.9)
A 		84.9
(3)
P 		83
B 19.4
(-0.7)
A 		3
(-3)
A 		4.1
(-2.8)
A 		46.7
(3)
M 		44
C 14.2
(-1.7)
A 		4.8
(-2.8)
A 		3.5
(-3)
A 		53.3
(3)
A 		50
avr 11.8
(-2.1) 		3.4
(-3) 		3.5
(-3) 		61.6
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 4.2
(-2.7)
A 		4.6
(-2.7)
A 		42
(3)
A 		29.7
(1.1)
A 		2.5
(-3)
A 		14
(-1.3)
A 		40
B 17.3
(2.5)
A 		7.1
(-1.3)
A 		18.7
(3)
A 		2.6
(-3)
A 		9
(-0.6)
A 		4
(-2.5)
A 		16
C 8.1
(-1.7)
A 		28.3
(3)
A 		4.6
(-2.5)
A 		2.4
(-3)
A 		3.9
(-2.7)
A 		11.5
(-0.9)
A 		26
avr 9.9
(-1.3) 		13.3
(-0.1) 		21.8
(3) 		11.6
(-0.7) 		5.1
(-3) 		9.8
(-1.3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.7
(-2.9)
A 		0.5
(-3)
A 		0.8
(-2.8)
A 		12.4
(3)
P 		12
B 6.2
(0.6)
A 		0.7
(-3)
A 		0.9
(-2.9)
A 		9.9
(3)
M 		9
C 4.7
(-0.3)
A 		1.4
(-2.8)
A 		1.2
(-3)
A 		9
(3)
A 		8
avr 3.9
(-1.1) 		0.9
(-3) 		1
(-2.9) 		10.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		1.6
(-2.4)
A 		9.1
(3)
A 		7.5
(1.9)
A 		0.7
(-3)
A 		3.4
(-1.1)
A 		8
B 6
(3)
A 		2.4
(-1.1)
A 		4.5
(1.3)
A 		0.7
(-3)
A 		3.7
(0.4)
A 		1.5
(-2.1)
A 		5
C 3
(-1.1)
A 		8.6
(3)
A 		1.2
(-2.5)
A 		0.5
(-3)
A 		1.3
(-2.4)
A 		3.9
(-0.5)
A 		8
avr 3.3
(-0.2) 		4.2
(1.6) 		4.9
(3) 		2.9
(-1) 		1.9
(-3) 		2.9
(-1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182674_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15062
Sequence Type Exemplar sequence
Representative Public ID C36C5.7 NCBI
Target Description C36C5.7 /REP_DB=WormBase Gene ID /WP=CE08596 /TR=O16400 /GB=AAB65930.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071462(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071462 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-10) (srab-10) mRNA, complete cds. 11/11 None
SNAP00000036654 ENSEMBL cdna:SNAP chromosome:CEL140:V:3142738:3144421:-1 11/11 None
GENEFINDER00000036667 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3142286:3144421:-1 11/11 None
C36C5.7 ENSEMBL cdna:known chromosome:CEL140:V:3142921:3144391:-1 gene:C36C5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3142920-3144391(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srab family
Gene Symbol srab-10
Ensembl C36C5.7
Entrez Gene 183263 Entrez gene
SwissProt Q8ITZ6 EMBL-EBI
WormBase CE08596 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503863 Serpentine Receptor, class AB (class A-like) family member (srab-10) [Caenorhabditis elegans] gb|AAN73877.1| Serpentine receptor, class ab (class a-like) protein 10 [Caenorhabditis elegans] 1.0E-171
blast NP_503863 Serpentine Receptor, class AB (class A-like) family member (srab-10) [Caenorhabditis elegans] gb|AAN73877.1| Serpentine receptor, class ab (class a-like) protein 10 [Caenorhabditis elegans] 1.0E-165
blast NP_503863 Serpentine Receptor, class AB (class A-like) family member (srab-10) [Caenorhabditis elegans] gb|AAN73877.1| Serpentine receptor, class ab (class a-like) protein 10 [Caenorhabditis elegans] 1.0E-154
blast NP_503862 Serpentine Receptor, class AB (class A-like) family member (srab-9) [Caenorhabditis elegans] gb|AAN73876.2| Serpentine receptor, class ab (class a-like) protein 9 [Caenorhabditis elegans] pir||E88989 protein C36C5.6 [imported] - Caenorhabditis elegans 1.0E-113
blast NP_503862 Serpentine Receptor, class AB (class A-like) family member (srab-9) [Caenorhabditis elegans] gb|AAN73876.2| Serpentine receptor, class ab (class a-like) protein 9 [Caenorhabditis elegans] pir||E88989 protein C36C5.6 [imported] - Caenorhabditis elegans 1.0E-111
blast NP_503862 Serpentine Receptor, class AB (class A-like) family member (srab-9) [Caenorhabditis elegans] gb|AAN73876.2| Serpentine receptor, class ab (class a-like) protein 9 [Caenorhabditis elegans] pir||E88989 protein C36C5.6 [imported] - Caenorhabditis elegans 1.0E-102
blast NP_503864 Serpentine Receptor, class AB (class A-like) family member (srab-11) [Caenorhabditis elegans] gb|AAN73878.1| Serpentine receptor, class ab (class a-like) protein 11 [Caenorhabditis elegans] 1.0E-100
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503863.1 7 13-35,48-70,93-115,136-158,178-200,234-253,263-285
C36C5.7 7 13-35,48-70,93-115,136-158,178-200,234-253,263-285
SNAP00000036654 7 24-46,53-75,103-125,146-168,188-210,244-263,273-295
GENEFINDER00000036667 7 24-46,53-75,103-125,146-168,188-210,243-265,275-297
Sequence
Target Sequence 
>C. ELEGANS:182674_AT
gcattgctacaggttaccattgcctttatctgcacttttattgcatttcatgagttttcg
ttcgatgagccaacaatgagctactgtattggtgtgaaattcggagagttcaacaacgct
gaaattgtgtcactggtcaatcttgttgtgcagattattgcaagaatttgcttccaattt
ttgtttaaacagaacgagaaactacgttccgagcagttaacatctaccctatctactcga
tattcattagagcaaaacttgaaatccatcgaaatattgaaatgttttgcgaatctccaa
tgtgcatttatgatagtccatatggtgctctttgtctacattcttcaatcggacgccgat
ttcgagcaatccacgtatattgcgctcgtggaactcaactccccacatcccttctacgca
attgtctccattttggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTGCTACAGGTTACCATTGCCT 457 307 427 Antisense
ACCATTGCCTTTATCTGCACTTTTA 308 87 442 Antisense
GTGTCACTGGTCAATCTTGTTGTGC 572 483 553 Antisense
GTTCCGAGCAGTTAACATCTACCCT 553 441 632 Antisense
TAACATCTACCCTATCTACTCGATA 563 639 644 Antisense
TTTGCGAATCTCCAATGTGCATTTA 211 669 712 Antisense
AGTCCATATGGTGCTCTTTGTCTAC 239 61 741 Antisense
GTCTACATTCTTCAATCGGACGCCG 526 467 760 Antisense
GCCGATTTCGAGCAATCCACGTATA 284 283 781 Antisense
TATTGCGCTCGTGGAACTCAACTCC 41 663 804 Antisense
CTACGCAATTGTCTCCATTTTGGCA 247 225 840 Antisense
Sequence Source Affymetrix Proprietary Database