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[182673_at]

Description T23F2.2 /REP_DB=WormBase Gene ID /WP=CE04997 /TR=Q22699 /GB=AAA80384.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 81      6grp_total > 36      4grp_total > 22      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 297
1 2 3 4 range
A 413.1
(2.9)
P 		164.6
(-2.1)
P 		120.6
(-3)
P 		417.6
(3)
P 		297
B 316.5
(1)
P 		222.3
(-1.3)
P 		156.3
(-3)
P 		396.1
(3)
P 		240
C 390.7
(3)
P 		226.6
(-2.7)
P 		219.4
(-3)
P 		359.9
(1.9)
P 		171
avr 373.4
(2.5) 		204.5
(-2) 		165.4
(-3) 		391.2
(3) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 284.4
(0.1)
P 		353
(3)
P 		229
(-2.2)
P 		213.8
(-2.8)
P 		263.6
(-0.8)
P 		210
(-3)
P 		143
B 327.6
(3)
P 		284.2
(1)
P 		211.8
(-2.3)
P 		300.1
(1.7)
P 		195.7
(-3)
P 		305.3
(2)
P 		132
C 275.7
(0.5)
P 		318.2
(3)
P 		216.4
(-3)
P 		260
(-0.4)
P 		233.9
(-2)
P 		290.9
(1.4)
P 		102
avr 295.9
(1.6) 		318.5
(3) 		219.1
(-3) 		258
(-0.7) 		231.1
(-2.3) 		268.7
(-0) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 150.4
(3)
P 		35.7
(-2.8)
P 		31.5
(-3)
P 		61.1
(-1.5)
P 		119
B 100.9
(3)
P 		54.9
(-1.3)
P 		36.2
(-3)
P 		84.4
(1.5)
P 		65
C 129.3
(3)
P 		65.2
(-2.6)
P 		76.5
(-1.6)
P 		60.7
(-3)
P 		69
avr 126.9
(3) 		51.9
(-2.7) 		48.1
(-3) 		68.7
(-1.4) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 52.4
(-2.8)
P 		125.5
(3)
P 		49.9
(-3)
P 		54.2
(-2.7)
P 		79.6
(-0.6)
P 		51.1
(-2.9)
P 		76
B 114
(3)
P 		94.6
(1.1)
P 		51.4
(-3)
P 		79.5
(-0.3)
P 		79.5
(-0.3)
P 		113.9
(3)
P 		63
C 102.2
(3)
P 		97.1
(2.4)
P 		55.1
(-2.7)
P 		52.3
(-3)
P 		75.7
(-0.2)
P 		97.4
(2.4)
P 		50
avr 89.5
(1.2) 		105.7
(3) 		52.1
(-3) 		62
(-1.9) 		78.3
(-0.1) 		87.5
(1) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182673_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16813
Sequence Type Exemplar sequence
Representative Public ID T23F2.2 NCBI
Target Description T23F2.2 /REP_DB=WormBase Gene ID /WP=CE04997 /TR=Q22699 /GB=AAA80384.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171953(10), NM_171688(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171953 NCBI Caenorhabditis elegans T23F2.2b (T23F2.2) mRNA, complete cds. 10/11 None
NM_171688 NCBI Caenorhabditis elegans T23F2.2a (T23F2.2) mRNA, complete cds. 10/11 None
GENEFINDER00000015220 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5496272:5505152:-1 10/11 None
T23F2.2b ENSEMBL cdna:known chromosome:CEL140:X:5496028:5505212:-1 gene:T23F2.2 10/11 None
T23F2.2a ENSEMBL cdna:known chromosome:CEL140:X:5496797:5505152:-1 gene:T23F2.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015214 5/11 Cross Hyb Matching Probes None
SNAP00000015215 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5496796-5505152(-) 100.0 100.0
Public Domain and Genome References
Ensembl T23F2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69070 Hypothetical protein T23F2.2b [Caenorhabditis elegans] ref|NP_741794.1| T23F2.2b [Caenorhabditis elegans] 0.0
blast AAM69069 Hypothetical protein T23F2.2a [Caenorhabditis elegans] ref|NP_741793.1| T23F2.2a [Caenorhabditis elegans] 0.0
blast T16927 hypothetical protein T23F2.2 - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:182673_AT
gacatctctttatctcacatcgaaggaacaacaaaaattgccattaatgtccgcatcctg
gcatgaaaaagctttggaaaacgatttgccagatggcgacactgattatgacaggagaaa
tatccgggtttgttggaaggttctcaccttgaaggttgtctcattgcgtgaaaaagtagg
gaagctgtcgcgtgaaaacaaggacttatcggcgaaactcacatatttcaccgcgtcaaa
accagactcctctaaaatgttagaactggaacaagaaactgaagaactgaaggcaactgt
aaaagatctcttacaaagggtttctcacgtggctacaccaaattatgatcgtcaaattga
actactccaagatgagctggacattcggcgacaggaaagtgcgatgtatgagaagaaaat
tactgaaatcgaagaagaaaggaaagagatgtacctagtaatgttcaaaaaaggacaaca
ggcggctaacatggaaataaaagaagaaaaaatggttgatgcaatgacggaagacagagt
tactttgaagtttttacatgatgctttttactattacttgctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATCTCTTTATCTCACATCGAAG 604 369 3921 Antisense
AATTGCCATTAATGTCCGCATCCTG 61 179 3956 Antisense
TAATGTCCGCATCCTGGCATGAAAA 381 635 3965 Antisense
CACCTTGAAGGTTGTCTCATTGCGT 689 201 4065 Antisense
GTAGGGAAGCTGTCGCGTGAAAACA 644 455 4096 Antisense
AGGACTTATCGGCGAAACTCACATA 328 53 4121 Antisense
CATATTTCACCGCGTCAAAACCAGA 137 215 4142 Antisense
TACAAAGGGTTTCTCACGTGGCTAC 63 605 4232 Antisense
GTGGCTACACCAAATTATGATCGTC 620 491 4249 Antisense
ATGAGCTGGACATTCGGCGACAGGA 295 45 4292 Antisense
ATGCTTTTTACTATTACTTGCTCAA 429 43 4481 Antisense
Sequence Source Affymetrix Proprietary Database