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[182672_at]

Description C50E3.1 /REP_DB=WormBase Gene ID /WP=CE08894 /TR=Q22934 /GB=AAB04889.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.8
(-1.7)
A 		6.6
(-1)
A 		4.4
(-3)
A 		10.9
(3)
A 		7
B 3.6
(-2.2)
A 		4.9
(-1.6)
A 		13.8
(3)
A 		2.1
(-3)
A 		12
C 13.4
(3)
A 		4.6
(-1.7)
A 		2.2
(-3)
A 		6.8
(-0.5)
A 		11
avr 7.6
(3) 		5.4
(-3) 		6.8
(0.8) 		6.6
(0.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 11.3
(-1.4)
A 		8.5
(-1.9)
A 		6.4
(-2.3)
A 		2.1
(-3)
A 		7.6
(-2)
A 		36.8
(3)
A 		35
B 5.7
(-2.2)
A 		2.6
(-3)
A 		8.7
(-1.5)
A 		27
(3)
A 		8.3
(-1.6)
A 		23.2
(2.1)
A 		24
C 6.1
(-2.9)
A 		53.1
(3)
A 		5.2
(-3)
A 		5.3
(-3)
A 		4.9
(-3)
A 		5.2
(-3)
A 		48
avr 7.7
(-2.6) 		21.4
(2.9) 		6.8
(-3) 		11.5
(-1.1) 		6.9
(-3) 		21.7
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.1
(3)
A 		1.4
(-1.7)
A 		1.2
(-3)
A 		1.6
(-0.3)
A 		1
B 1.2
(-1.4)
A 		1.2
(-1.4)
A 		3.2
(3)
A 		0.5
(-3)
A 		3
C 4.4
(3)
A 		1.3
(-2.2)
A 		0.8
(-3)
A 		1.2
(-2.3)
A 		4
avr 2.6
(3) 		1.3
(-2.2) 		1.7
(-0.6) 		1.1
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.1
(-1.9)
A 		3
(-1.2)
A 		1.4
(-2.4)
A 		0.5
(-3)
A 		2.3
(-1.7)
A 		9
(3)
A 		9
B 2
(-2.2)
A 		0.9
(-3)
A 		2.1
(-2.1)
A 		7.1
(1.8)
A 		3.4
(-1.1)
A 		8.7
(3)
A 		8
C 2.2
(-2.6)
A 		16.2
(3)
A 		1.3
(-2.9)
A 		1.1
(-3)
A 		1.6
(-2.8)
A 		1.8
(-2.7)
A 		15
avr 2.1
(-2.4) 		6.7
(3) 		1.6
(-3) 		2.9
(-1.5) 		2.4
(-2.1) 		6.5
(2.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182672_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11396
Sequence Type Exemplar sequence
Representative Public ID C50E3.1 NCBI
Target Description C50E3.1 /REP_DB=WormBase Gene ID /WP=CE08894 /TR=Q22934 /GB=AAB04889.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072566(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072566 NCBI Caenorhabditis elegans C50E3.1 (C50E3.1) mRNA, complete cds. 11/11 None
SNAP00000028543 ENSEMBL cdna:SNAP chromosome:CEL140:V:7613859:7614497:1 11/11 None
GENEFINDER00000028559 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7612962:7614497:1 10/11 None
C50E3.1 ENSEMBL cdna:known chromosome:CEL140:V:7613859:7614497:1 gene:C50E3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7613859-7614498(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50E3.1
Entrez Gene 183653 Entrez gene
SwissProt Q22934 EMBL-EBI
WormBase CE08894 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504966 C50E3.2 [Caenorhabditis elegans] gb|AAB04888.1| Hypothetical protein C50E3.2 [Caenorhabditis elegans] 3.0E-87
blast NP_504967 C50E3.1 [Caenorhabditis elegans] gb|AAB04889.1| Hypothetical protein C50E3.1 [Caenorhabditis elegans] 2.0E-71
blast NP_504967 C50E3.1 [Caenorhabditis elegans] gb|AAB04889.1| Hypothetical protein C50E3.1 [Caenorhabditis elegans] 4.0E-43
blast AAY86245 Hypothetical protein C50E3.15 [Caenorhabditis elegans] 3.0E-36
blast NP_504965 C50E3.3 [Caenorhabditis elegans] gb|AAB04887.1| Hypothetical protein C50E3.3 [Caenorhabditis elegans] 2.0E-20
blast CAE61506 Hypothetical protein CBG05405 [Caenorhabditis briggsae] 2.0E-17
Sequence
Target Sequence 
>C. ELEGANS:182672_AT
ggggtgtttggattgatgggatgagaaataaaccttgcaatatgcaaaaaaatgaaacat
gcaacttaatggagggatttaactttactgatgccactctatatcacaaagatggttaca
tatggaatgagggcgaaccaaacggatataatggaaatcaaaattgtgtctatatgagcc
ttcctactgattcgggcgactctcgtaatgggactctggacgacgccggatgcgaagaac
atacctacttcctcaaaaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGTGTTTGGATTGATGGGATGAG 364 497 62 Antisense
GATTTAACTTTACTGATGCCACTCT 623 427 137 Antisense
GATGCCACTCTATATCACAAAGATG 407 413 151 Antisense
GAATGAGGGCGAACCAAACGGATAT 425 331 186 Antisense
AATTGTGTCTATATGAGCCTTCCTA 180 179 223 Antisense
CTATATGAGCCTTCCTACTGATTCG 486 223 231 Antisense
TACTGATTCGGGCGACTCTCGTAAT 640 645 246 Antisense
CGACTCTCGTAATGGGACTCTGGAC 378 251 258 Antisense
ACTCTGGACGACGCCGGATGCGAAG 186 95 274 Antisense
GCCGGATGCGAAGAACATACCTACT 394 283 286 Antisense
GAACATACCTACTTCCTCAAAAAGC 480 351 298 Antisense
Sequence Source Affymetrix Proprietary Database