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[182671_at]

Description F12D9.1 /REP_DB=WormBase Gene ID /WP=CE02633 /TR=Q19362 /GB=AAA80429.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 39      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 237.3
(3)
P 		59.1
(-1.7)
A 		12.1
(-3)
A 		121.6
(-0.1)
P 		225
B 268.5
(3)
P 		76.1
(-2.5)
A 		99.6
(-1.8)
P 		56.8
(-3)
A 		212
C 213.9
(3)
P 		82
(-2.3)
M 		64.2
(-3)
A 		78.4
(-2.4)
P 		150
avr 239.9
(3) 		72.4
(-2.5) 		58.6
(-3) 		85.6
(-2.1) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 223.7
(3)
P 		115.9
(0.1)
P 		52.9
(-1.6)
A 		78.3
(-1)
A 		65.6
(-1.3)
A 		2.9
(-3)
A 		221
B 169.2
(3)
P 		130.1
(1)
P 		58.9
(-2.5)
A 		54.7
(-2.8)
A 		50.9
(-2.9)
A 		49.9
(-3)
A 		119
C 174
(3)
P 		150
(2)
P 		67.2
(-1.3)
A 		27.3
(-2.9)
A 		23.8
(-3)
A 		36.4
(-2.5)
A 		150
avr 189
(3) 		132
(0.9) 		59.7
(-1.9) 		53.4
(-2.1) 		46.8
(-2.4) 		29.7
(-3) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 86.4
(3)
P 		12.8
(-2.3)
A 		3.2
(-3)
A 		17.8
(-1.9)
P 		83
B 85.6
(3)
P 		18.8
(-2.5)
A 		23.1
(-2.1)
P 		12.1
(-3)
A 		74
C 70.8
(3)
P 		23.6
(-1.9)
M 		22.4
(-2)
A 		13.2
(-3)
P 		58
avr 80.9
(3) 		18.4
(-2.6) 		16.2
(-2.8) 		14.4
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 41.2
(3)
P 		41.2
(3)
P 		11.5
(-1.4)
A 		19.8
(-0.2)
A 		19.8
(-0.2)
A 		0.7
(-3)
A 		41
B 58.9
(3)
P 		43.3
(0.9)
P 		14.3
(-3)
A 		14.5
(-3)
A 		20.7
(-2.1)
A 		18.6
(-2.4)
A 		45
C 64.5
(3)
P 		45.8
(1.1)
P 		17.1
(-1.8)
A 		5.5
(-3)
A 		7.7
(-2.8)
A 		12.2
(-2.3)
A 		59
avr 54.9
(3) 		43.4
(1.4) 		14.3
(-2.5) 		13.3
(-2.6) 		16.1
(-2.2) 		10.5
(-3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182671_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16363
Sequence Type Exemplar sequence
Representative Public ID F12D9.1 NCBI
Target Description F12D9.1 /REP_DB=WormBase Gene ID /WP=CE02633 /TR=Q19362 /GB=AAA80429.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029384(9), NM_001029385(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029384 NCBI Caenorhabditis elegans F12D9.1a (F12D9.1) mRNA, complete cds. 9/11 None
NM_001029385 NCBI Caenorhabditis elegans F12D9.1b (F12D9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000014489 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8639399:8643210:-1 9/11 None
F12D9.1a ENSEMBL cdna:known chromosome:CEL140:X:8639326:8643210:-1 gene:F12D9.1 9/11 None
F12D9.1b ENSEMBL cdna:known chromosome:CEL140:X:8639680:8643210:-1 gene:F12D9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014486 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8639678-8643209(-) 100.0 100.0
Public Domain and Genome References
Ensembl F12D9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80429 Hypothetical protein F12D9.1a [Caenorhabditis elegans] ref|NP_001024555.1| F12D9.1a [Caenorhabditis elegans] 1.0E-168
blast AAQ81278 Hypothetical protein F12D9.1b [Caenorhabditis elegans] ref|NP_001024556.1| F12D9.1b [Caenorhabditis elegans] 1.0E-161
blast AAA80429 Hypothetical protein F12D9.1a [Caenorhabditis elegans] ref|NP_001024555.1| F12D9.1a [Caenorhabditis elegans] 1.0E-156
blast AAQ81278 Hypothetical protein F12D9.1b [Caenorhabditis elegans] ref|NP_001024556.1| F12D9.1b [Caenorhabditis elegans] 1.0E-153
blast CAE69346 Hypothetical protein CBG15427 [Caenorhabditis briggsae] 1.0E-152
blast AAQ81278 Hypothetical protein F12D9.1b [Caenorhabditis elegans] ref|NP_001024556.1| F12D9.1b [Caenorhabditis elegans] 1.0E-146
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024555.1 4 64-86,199-221,228-250,270-292
NP_001024556.1 4 64-86,177-199,206-228,248-270
F12D9.1a 4 64-86,199-221,228-250,270-292
F12D9.1b 4 64-86,177-199,206-228,248-270
GENEFINDER00000014489 3 64-86,177-199,206-228
Sequence
Target Sequence 
>C. ELEGANS:182671_AT
gttggtgcctgtgtactgattatgcaaagttttcctatttttatgaacaattgggttttt
ctcacagaacctcgggggattaataaaacaaacgagaatggtgaacaattagagtcaaca
tttcattacaatacgggatattttcaaatttgtagagtccatatcaataataactctgga
attatttatgatgaaattgaaattcctccatctgaaagtgaatacaaatgctacctcaac
ccattgctttctcaagtcgatctcactgacatttctcttgcttctctcgcggtaattata
cggctaggcttacctgctctattacatgtcagtggtgcacttgtttgttgttttgccttc
tttttaggggttgttggacatattcgatcttcgttttacacactattctcatcaattaca
tatatttgcggaagtatcattctttgcatcgctgttttaatggtcgtttgtgtagtggat
gacgagttagcacccacgaatgaaaccgaatgcagccggagagccaagcaaattcagtta
tacatatggaccacctttcttttcatctgcactgtcattcatacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGTGCCTGTGTACTGATTATGC 284 437 226 Antisense
TACAAATGCTACCTCAACCCATTGC 278 641 448 Antisense
ACCCATTGCTTTCTCAAGTCGATCT 307 89 464 Antisense
GTCGATCTCACTGACATTTCTCTTG 619 473 481 Antisense
GCTTCTCTCGCGGTAATTATACGGC 538 305 505 Antisense
TTATACGGCTAGGCTTACCTGCTCT 689 677 521 Antisense
GATCTTCGTTTTACACACTATTCTC 30 421 611 Antisense
GTATCATTCTTTGCATCGCTGTTTT 188 455 659 Antisense
TGACGAGTTAGCACCCACGAATGAA 225 563 705 Antisense
TACATATGGACCACCTTTCTTTTCA 663 643 766 Antisense
TTCATCTGCACTGTCATTCATACCA 207 689 787 Antisense
Sequence Source Affymetrix Proprietary Database