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[182670_at]

Description F13A2.2 /REP_DB=WormBase Gene ID /WP=CE09364 /TR=O16895 /GB=AAB69896.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 32.1
(2.7)
A 		32.6
(2.8)
A 		12.1
(-3)
A 		33.2
(3)
A 		21
B 36.2
(2.3)
P 		37.3
(2.8)
A 		37.7
(3)
A 		25.1
(-3)
A 		13
C 31.3
(-0.4)
P 		1.4
(-3)
A 		37.1
(0.2)
A 		69.1
(3)
P 		68
avr 33.2
(0) 		23.8
(-3) 		29
(-1.3) 		42.5
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 39.4
(1.5)
A 		50.7
(3)
P 		33
(0.6)
A 		30.4
(0.3)
A 		21.1
(-0.9)
A 		5.7
(-3)
A 		45
B 11
(-2.2)
A 		30.5
(1.8)
A 		19.5
(-0.5)
A 		36.6
(3)
M 		7.3
(-3)
A 		18
(-0.8)
A 		29
C 19.3
(-0.1)
A 		36.7
(3)
A 		6.2
(-2.4)
A 		8.3
(-2)
A 		2.9
(-3)
A 		14
(-1)
A 		34
avr 23.2
(-0.3) 		39.3
(3) 		19.6
(-1.1) 		25.1
(0.1) 		10.4
(-3) 		12.6
(-2.5) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.7
(3)
A 		7.1
(-0.2)
A 		3.2
(-3)
A 		4.9
(-1.8)
A 		9
B 11.5
(3)
P 		9.2
(0.8)
A 		8.7
(0.3)
A 		5.3
(-3)
A 		6
C 10.4
(1.8)
P 		0.4
(-3)
A 		12.9
(3)
A 		11.6
(2.4)
P 		13
avr 11.2
(3) 		5.6
(-3) 		8.3
(-0.1) 		7.3
(-1.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.3
(-0.9)
A 		18
(3)
P 		7.2
(-0.9)
A 		7.7
(-0.7)
A 		6.4
(-1.2)
A 		1.4
(-3)
A 		17
B 3.8
(-2.3)
A 		10.2
(3)
A 		4.7
(-1.6)
A 		9.7
(2.6)
M 		3
(-3)
A 		6.7
(0.1)
A 		7
C 7.2
(0.7)
A 		11.2
(3)
A 		1.6
(-2.6)
A 		1.7
(-2.5)
A 		0.9
(-3)
A 		4.7
(-0.8)
A 		10
avr 6.1
(-1.3) 		13.1
(3) 		4.5
(-2.3) 		6.4
(-1.1) 		3.4
(-3) 		4.3
(-2.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182670_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15432
Sequence Type Exemplar sequence
Representative Public ID F13A2.2 NCBI
Target Description F13A2.2 /REP_DB=WormBase Gene ID /WP=CE09364 /TR=O16895 /GB=AAB69896.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071807
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000037896 ENSEMBL cdna:SNAP chromosome:CEL140:V:4379878:4383877:-1 None
F13A2.2 ENSEMBL cdna:known chromosome:CEL140:V:4383779:4384054:-1 gene:F13A2.2 None
GENEFINDER00000037903 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4382730:4385027:-1 None
NM_071807 NCBI Caenorhabditis elegans F13A2.2 (F13A2.2) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4383334-4384054(-) 88.56 100.0
Public Domain and Genome References
Gene Title
Ensembl F13A2.2
Entrez Gene 184393 Entrez gene
SwissProt O16895 EMBL-EBI
WormBase CE32373 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69896 Hypothetical protein F13A2.2 [Caenorhabditis elegans] ref|NP_504208.2| F13A2.2 [Caenorhabditis elegans] 5.0E-39
blast AAB69896 Hypothetical protein F13A2.2 [Caenorhabditis elegans] ref|NP_504208.2| F13A2.2 [Caenorhabditis elegans] 4.0E-35
blast AAB69895 Hypothetical protein F13A2.1 [Caenorhabditis elegans] ref|NP_504207.1| F13A2.1 [Caenorhabditis elegans] 5.0E-24
Sequence
Target Sequence 
>C. ELEGANS:182670_AT
atgtttcattacagtttccgatgtaaactaacgatgaactatgatattgcaacagctttc
tacgactcaacccatgaggtttgcagccaatcttcagaaaacttgatctattattcttat
caattaaccatgtggttggaagcaacaaagaagtgttcttttgagcacgaaaaattagtc
gatttaatggaggagaggaattgcaagtcagaaccaagatgctcatctccatatccacag
tctcataccatgcaatcgacaactgatccaaatcatcttacttttctccgagataacatg
aattctgtgaagatgagaatttcagagcttgaaagtcaaattgaggagaaacctgatgat
ctacaattgtcccgtgaggtaattttttataaaataaacttgccgaatactttctatacc
gctgtttttgtttcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTTCATTACAGTTTCCGATGTA 614 45 13 Antisense
TATTGCAACAGCTTTCTACGACTCA 346 665 57 Antisense
CTACGACTCAACCCATGAGGTTTGC 8 225 72 Antisense
TGAGGTTTGCAGCCAATCTTCAGAA 664 565 87 Antisense
AAGTCAGAACCAAGATGCTCATCTC 619 157 217 Antisense
CATATCCACAGTCTCATACCATGCA 262 215 242 Antisense
TACCATGCAATCGACAACTGATCCA 124 651 258 Antisense
CCAAATCATCTTACTTTTCTCCGAG 65 277 280 Antisense
GATGATCTACAATTGTCCCGTGAGG 158 411 367 Antisense
ACTTGCCGAATACTTTCTATACCGC 6 103 410 Antisense
TCTATACCGCTGTTTTTGTTTCAAG 98 615 425 Antisense
Sequence Source Affymetrix Proprietary Database