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[182669_at]

Description C44C10.6 /REP_DB=WormBase Gene ID /WP=CE05413 /TR=Q18619 /GB=CAA93641.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 4.7
(0.4)
A 		6.3
(3)
A 		4.2
(-0.4)
A 		2.6
(-3)
A 		4
B 3.1
(-0.8)
A 		4.4
(1.8)
A 		2
(-3)
A 		5
(3)
A 		3
C 5.6
(-2.7)
A 		4.4
(-2.8)
A 		2.3
(-3)
A 		60.5
(3)
A 		58
avr 4.5
(-2.5) 		5
(-2.3) 		2.8
(-3) 		22.7
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 3
(-0.3)
A 		1.1
(-3)
A 		5
(2.6)
A 		3.8
(0.9)
A 		3.8
(0.9)
A 		5.3
(3)
A 		4
B 4.2
(-2)
A 		17.5
(3)
A 		2.6
(-2.6)
A 		1.5
(-3)
A 		7.8
(-0.6)
A 		2.4
(-2.7)
A 		16
C 1.7
(-1.8)
A 		4.4
(3)
A 		1
(-3)
A 		3.6
(1.6)
A 		1.8
(-1.6)
A 		2.7
(0)
A 		3
avr 3
(-2.9) 		7.7
(3) 		2.9
(-3) 		3
(-2.9) 		4.5
(-1) 		3.5
(-2.3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.7
(3)
A 		1.4
(1.6)
A 		1.1
(0.2)
A 		0.4
(-3)
A 		1
B 1
(2)
A 		1.1
(3)
A 		0.5
(-3)
A 		1.1
(3)
A 		1
C 1.9
(-2.3)
A 		1.3
(-2.7)
A 		0.8
(-3)
A 		10.2
(3)
A 		9
avr 1.5
(-1.6) 		1.3
(-2) 		0.8
(-3) 		3.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.6
(-1.7)
A 		0.4
(-3)
A 		1.1
(1.7)
A 		1
(1)
A 		1.1
(1.7)
A 		1.3
(3)
A 		1
B 1.5
(-1.8)
A 		5.8
(3)
A 		0.6
(-2.8)
A 		0.4
(-3)
A 		3.2
(0.1)
A 		0.9
(-2.4)
A 		5
C 0.6
(-1.2)
A 		1.3
(3)
A 		0.3
(-3)
A 		0.7
(-0.6)
A 		0.6
(-1.2)
A 		0.9
(0.6)
A 		1
avr 0.9
(-2.3) 		2.5
(3) 		0.7
(-3) 		0.7
(-3) 		1.6
(0) 		1
(-2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182669_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16756
Sequence Type Exemplar sequence
Representative Public ID C44C10.6 NCBI
Target Description C44C10.6 /REP_DB=WormBase Gene ID /WP=CE05413 /TR=Q18619 /GB=CAA93641.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077556(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077556 NCBI Caenorhabditis elegans C44C10.6 (C44C10.6) mRNA, complete cds. 11/11 None
GENEFINDER00000037985 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11698304:11699018:1 11/11 None
C44C10.6 ENSEMBL cdna:known chromosome:CEL140:X:11698304:11699018:1 gene:C44C10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11698303-11699018(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44C10.6
Entrez Gene 183455 Entrez gene
SwissProt Q18619 EMBL-EBI
WormBase CE05413 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93641 Hypothetical protein C44C10.6 [Caenorhabditis elegans] ref|NP_509957.1| C44C10.6 [Caenorhabditis elegans] 4.0E-72
Sequence
Target Sequence 
>C. ELEGANS:182669_AT
gacacgatgtaaatccatttctatcaagaaacttcaatcaatctacaatgaaactagaga
aaacaaagcaatcggatgactattataaaaaatggacccgagagcaattgtgtgaacatg
ccgagccactgcgtaatctaaaaaatccattcgcagacatgggaactttcctattcagta
cttctaactttgttcttgagtttccgcacagtgtgtcaatgttcttgaccaaagttttca
gacgcgttgccgcaatcgagagcaaaaaatgcatcgttggtgaaccatcatccaagtgtt
ttttcaaatcaactgatgagcatgcattcacgggtaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACGATGTAAATCCATTTCTATC 592 367 17 Antisense
AATGGACCCGAGAGCAATTGTGTGA 192 163 107 Antisense
TTGTGTGAACATGCCGAGCCACTGC 18 707 124 Antisense
TGCCGAGCCACTGCGTAATCTAAAA 453 583 135 Antisense
GGAACTTTCCTATTCAGTACTTCTA 474 525 178 Antisense
AGTACTTCTAACTTTGTTCTTGAGT 187 61 193 Antisense
CTTGAGTTTCCGCACAGTGTGTCAA 111 219 211 Antisense
GACCAAAGTTTTCAGACGCGTTGCC 112 383 243 Antisense
ACGCGTTGCCGCAATCGAGAGCAAA 625 91 258 Antisense
GAACCATCATCCAAGTGTTTTTTCA 364 345 298 Antisense
GATGAGCATGCATTCACGGGTAATC 382 411 331 Antisense
Sequence Source Affymetrix Proprietary Database