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[182666_at]

Description M01D1.6 /REP_DB=WormBase Gene ID /WP=CE12252 /TR=O17227 /GB=AAB70994.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 15.4
(-1.3)
A 		28.2
(3)
A 		10.2
(-3)
A 		10.3
(-3)
A 		18
B 3.3
(-3)
A 		31
(3)
A 		4.4
(-2.8)
A 		8.9
(-1.8)
A 		28
C 30.7
(0.3)
A 		12.9
(-3)
A 		25.5
(-0.7)
A 		45.5
(3)
A 		33
avr 16.5
(-1.2) 		24
(3) 		13.4
(-3) 		21.6
(1.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 30.5
(0.9)
A 		2.4
(-3)
A 		45.1
(3)
A 		23.5
(-0)
A 		7.5
(-2.3)
A 		9.5
(-2)
A 		43
B 11.4
(-0)
A 		5.4
(-2.6)
A 		18.6
(3)
A 		17.6
(2.6)
A 		6.6
(-2.1)
A 		4.4
(-3)
A 		14
C 20.6
(0.8)
A 		8.1
(-2.3)
A 		27.9
(2.5)
A 		5.1
(-3)
A 		13.4
(-1)
A 		29.8
(3)
A 		25
avr 20.8
(0.7) 		5.3
(-3) 		30.5
(3) 		15.4
(-0.6) 		9.2
(-2.1) 		14.6
(-0.8) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.6
(2.3)
A 		6.1
(3)
A 		2.7
(-1.4)
A 		1.5
(-3)
A 		5
B 1.1
(-2.9)
A 		7.6
(3)
A 		1
(-3)
A 		1.9
(-2.2)
A 		7
C 10.2
(3)
A 		3.7
(-3)
A 		8.9
(1.8)
A 		7.7
(0.7)
A 		7
avr 5.6
(2.4) 		5.8
(3) 		4.2
(-1.6) 		3.7
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 5.6
(0.2)
A 		0.8
(-3)
A 		9.8
(3)
A 		6
(0.5)
A 		2.3
(-2)
A 		2.3
(-2)
A 		9
B 4
(1.6)
A 		1.8
(-2.6)
A 		4.5
(2.6)
A 		4.7
(3)
A 		2.7
(-0.9)
A 		1.6
(-3)
A 		3
C 7.6
(1.4)
A 		2.5
(-2)
A 		7.1
(1.1)
A 		1
(-3)
A 		4.3
(-0.8)
A 		10
(3)
A 		9
avr 5.7
(1.4) 		1.7
(-3) 		7.1
(3) 		3.9
(-0.6) 		3.1
(-1.4) 		4.6
(0.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182666_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5853
Sequence Type Exemplar sequence
Representative Public ID M01D1.6 NCBI
Target Description M01D1.6 /REP_DB=WormBase Gene ID /WP=CE12252 /TR=O17227 /GB=AAB70994.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000029286 ENSEMBL cdna:SNAP chromosome:CEL140:II:1037565:1039310:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029298 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast E88035 protein M01D1.6 [imported] - Caenorhabditis elegans 5.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 4.8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 5.4
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 4.7
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.0
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 7.4
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 6.9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.0
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 7.4
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.6
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 11.0
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 7.4
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 11.0
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 15.0
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.0E-7
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.0E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 7.4E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.3E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.7E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 4.8E-10
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.0E-10
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 8.3E-10
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.6E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.7E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.8E-10
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.8E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.7E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 9.2E-10
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.4E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.3E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.1E-5
Sequence
Target Sequence 
>C. ELEGANS:182666_AT
gtctcacgtcgcagggcgtaatggaccaggcgggggtcaatcgcgtcgagggggagccaa
ttaatagacttaggacttgcgaagggaaagggaacggccgaggagacatgcaaggggtgg
gcaacttgggtaaggcgttacgggggagggaagactccttaatcgtttcctcggaaacta
gagggtttccgcgaatgggattatggccggggttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCACGTCGCAGGGCGTAATGGA 107 467 1502 Antisense
ATGGACCAGGCGGGGGTCAATCGCG 636 49 1522 Antisense
TCAATCGCGTCGAGGGGGAGCCAAT 592 633 1538 Antisense
GGGGGAGCCAATTAATAGACTTAGG 255 293 1551 Antisense
TAGACTTAGGACTTGCGAAGGGAAA 257 571 1566 Antisense
AAGGGAACGGCCGAGGAGACATGCA 492 159 1589 Antisense
GAGACATGCAAGGGGTGGGCAACTT 444 393 1604 Antisense
TGGGCAACTTGGGTAAGGCGTTACG 47 1 1619 Antisense
GGAAGACTCCTTAATCGTTTCCTCG 271 531 1650 Antisense
ACTAGAGGGTTTCCGCGAATGGGAT 679 93 1678 Antisense
GCGAATGGGATTATGGCCGGGGTTC 195 251 1692 Antisense
Sequence Source Affymetrix Proprietary Database