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[182664_at]

Description F09F9.1 /REP_DB=WormBase Gene ID /WP=CE04346 /TR=Q19282 /GB=AAA81762.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 22      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 90      6grp_total > 21      4grp_total > 21      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 249
1 2 3 4 range
A 169.2
(-1.2)
P 		117.9
(-2.7)
P 		107
(-3)
P 		311.5
(3)
P 		205
B 211.6
(3)
P 		126.9
(-1.1)
P 		87.4
(-3)
P 		190
(2)
P 		124
C 209.7
(1.3)
P 		121.1
(-1.3)
P 		62.2
(-3)
P 		270
(3)
P 		208
avr 196.8
(0.9) 		122
(-1.7) 		85.5
(-3) 		257.2
(3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 184.2
(1.9)
P 		177.6
(1.7)
P 		211.3
(3)
P 		149.8
(0.6)
P 		114.6
(-0.8)
P 		60.1
(-3)
P 		151
B 162.9
(0.5)
P 		233.9
(3)
P 		139.6
(-0.3)
P 		143.1
(-0.2)
P 		124
(-0.8)
P 		61.4
(-3)
P 		173
C 119.5
(-0.9)
P 		215
(3)
P 		162.4
(0.9)
P 		109.4
(-1.3)
P 		75.4
(-2.7)
P 		68.2
(-3)
P 		147
avr 155.5
(0.8) 		208.8
(3) 		171.1
(1.4) 		134.1
(-0.1) 		104.7
(-1.3) 		63.2
(-3) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 61.6
(3)
P 		25.6
(-3)
P 		28
(-2.6)
P 		45.6
(0.3)
P 		36
B 67.5
(3)
P 		31.4
(-1.6)
P 		20.3
(-3)
P 		40.5
(-0.4)
P 		47
C 69.4
(3)
P 		34.8
(-1.4)
P 		21.7
(-3)
P 		45.5
(-0)
P 		48
avr 66.2
(3) 		30.6
(-2) 		23.3
(-3) 		43.9
(-0.1) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 34
(-0.6)
P 		63.2
(3)
P 		46
(0.9)
P 		38
(-0.1)
P 		34.6
(-0.5)
P 		14.6
(-3)
P 		49
B 56.7
(0.7)
P 		77.9
(3)
P 		33.9
(-1.8)
P 		37.9
(-1.4)
P 		50.4
(-0)
P 		22.9
(-3)
P 		55
C 44.3
(0.1)
P 		65.6
(3)
P 		41.3
(-0.3)
P 		22
(-3)
P 		24.4
(-2.7)
P 		22.8
(-2.9)
P 		44
avr 45
(0.1) 		68.9
(3) 		40.4
(-0.5) 		32.6
(-1.5) 		36.5
(-1) 		20.1
(-3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182664_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16351
Sequence Type Exemplar sequence
Representative Public ID F09F9.1 NCBI
Target Description F09F9.1 /REP_DB=WormBase Gene ID /WP=CE04346 /TR=Q19282 /GB=AAA81762.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076298(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076298 NCBI Caenorhabditis elegans F09F9.1 (F09F9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000015425 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4117925:4119461:1 11/11 None
SNAP00000015417 ENSEMBL cdna:SNAP chromosome:CEL140:X:4118015:4119461:1 10/11 None
F09F9.1 ENSEMBL cdna:known chromosome:CEL140:X:4115312:4119330:1 gene:F09F9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4115312-4119331(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09F9.1
Entrez Gene 184262 Entrez gene
SwissProt Q19282 EMBL-EBI
WormBase CE04346 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81762 Hypothetical protein F09F9.1 [Caenorhabditis elegans] ref|NP_508699.1| F09F9.1 [Caenorhabditis elegans] 0.0
blast CAE68524 Hypothetical protein CBG14346 [Caenorhabditis briggsae] 1.0E-110
blast CAE68524 Hypothetical protein CBG14346 [Caenorhabditis briggsae] 8.0E-93
blast AAA81762 Hypothetical protein F09F9.1 [Caenorhabditis elegans] ref|NP_508699.1| F09F9.1 [Caenorhabditis elegans] 9.0E-85
blast CAE68524 Hypothetical protein CBG14346 [Caenorhabditis briggsae] 3.0E-81
blast CAE68523 Hypothetical protein CBG14345 [Caenorhabditis briggsae] 5.0E-68
blast AAA81762 Hypothetical protein F09F9.1 [Caenorhabditis elegans] ref|NP_508699.1| F09F9.1 [Caenorhabditis elegans] 2.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508699.1 7 10-32,45-67,85-107,128-150,215-237,249-269,279-301
F09F9.1 7 10-32,45-67,85-107,128-150,215-237,249-269,279-301
GENEFINDER00000015425 3 64-86,98-118,128-150
SNAP00000015417 3 34-56,68-88,98-120
Sequence
Target Sequence 
>C. ELEGANS:182664_AT
gaagcccaaaagttctttctcatcataattcaatgaaaagtttacggtcagttcggagtc
agaagagtatgcgttcgttgaaaagtcaaaaaagcacacagagcattcgaatattcaatc
atcaccacgatacttatcagacttgctttggtttcatgcacgtaaagattgctacctgct
ccattggatttttcgctctccttggtgtctgctttactctggtctattgcgttttcacat
cacaggagcaacggcgccctaatatgaagttatacgcgattcccatgatcatagtcatta
ttgccctgctttacatgtttgttggaatcttacaacaaaaagcgcatttattatttgctt
ttattgcattacagatatcagtgacattcggaattgctgttttgattgttattattttga
tatcagtagcttgtaatactacgttcatcctcaaattttttgtggacattagtctagccc
aatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCCAAAAGTTCTTTCTCATCA 65 345 488 Antisense
GACTTGCTTTGGTTTCATGCACGTA 100 371 627 Antisense
TAAAGATTGCTACCTGCTCCATTGG 237 641 650 Antisense
TGTCTGCTTTACTCTGGTCTATTGC 26 559 693 Antisense
GTCTATTGCGTTTTCACATCACAGG 29 469 709 Antisense
GAGCAACGGCGCCCTAATATGAAGT 318 389 733 Antisense
GTTATACGCGATTCCCATGATCATA 316 447 756 Antisense
GATCATAGTCATTATTGCCCTGCTT 249 419 774 Antisense
ATTGCCCTGCTTTACATGTTTGTTG 368 7 787 Antisense
ATACTACGTTCATCCTCAAATTTTT 637 23 923 Antisense
GTGGACATTAGTCTAGCCCAATCTG 205 491 949 Antisense
Sequence Source Affymetrix Proprietary Database