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[182663_at]

Description F57F4.1 /REP_DB=WormBase Gene ID /WP=CE11338 /TR=Q94245 /GB=AAB09164.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 43      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 76.1
(0.2)
A 		82
(3)
A 		69.2
(-3)
A 		74.6
(-0.5)
A 		13
B 88.9
(1.8)
A 		92.8
(2.1)
A 		104
(3)
A 		30
(-3)
A 		74
C 47.6
(-3)
A 		127.4
(3)
P 		48.1
(-3)
A 		120.4
(2.5)
A 		80
avr 70.9
(-3) 		100.7
(3) 		73.8
(-2.4) 		75
(-2.2) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 68.5
(-2.8)
A 		67.5
(-2.8)
A 		59.9
(-3)
A 		125.8
(-1.1)
P 		269.9
(3)
P 		228.8
(1.8)
P 		210
B 57.2
(-3)
A 		67.2
(-2.7)
A 		82.5
(-2.4)
A 		124.1
(-1.3)
A 		202
(0.6)
P 		296.6
(3)
P 		239
C 56.2
(-3)
A 		158.2
(-0.4)
A 		65.7
(-2.8)
A 		110.2
(-1.6)
A 		141.1
(-0.8)
P 		291.3
(3)
P 		235
avr 60.6
(-3) 		97.6
(-2) 		69.4
(-2.8) 		120
(-1.3) 		204.3
(1.1) 		272.2
(3) 		212
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 27.7
(3)
A 		17.8
(-0.5)
A 		18.1
(-0.4)
A 		10.9
(-3)
A 		17
B 28.4
(3)
A 		22.9
(1.5)
A 		24.1
(1.8)
A 		6.4
(-3)
A 		22
C 15.8
(-3)
A 		36.6
(3)
P 		16.8
(-2.7)
A 		20.3
(-1.7)
A 		21
avr 24
(2.2) 		25.8
(3) 		19.7
(0.2) 		12.5
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 12.6
(-3)
A 		24
(-2)
A 		13
(-3)
A 		31.9
(-1.3)
P 		81.4
(3)
P 		55.7
(0.8)
P 		69
B 19.9
(-3)
A 		22.4
(-2.8)
A 		20
(-3)
A 		32.9
(-2.1)
A 		82.1
(1.1)
P 		110.6
(3)
P 		91
C 20.8
(-2.7)
A 		48.3
(-0.7)
A 		16.7
(-3)
A 		22.2
(-2.6)
A 		45.7
(-0.8)
P 		97.5
(3)
P 		81
avr 17.8
(-2.9) 		31.6
(-1.7) 		16.6
(-3) 		29
(-2) 		69.7
(1.5) 		87.9
(3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182663_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11307
Sequence Type Exemplar sequence
Representative Public ID F57F4.1 NCBI
Target Description F57F4.1 /REP_DB=WormBase Gene ID /WP=CE11338 /TR=Q94245 /GB=AAB09164.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072224(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072224 NCBI Caenorhabditis elegans F57F4.1 (F57F4.1) mRNA, complete cds. 11/11 None
SNAP00000021867 ENSEMBL cdna:SNAP chromosome:CEL140:V:6393095:6395065:1 11/11 None
GENEFINDER00000021871 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6393095:6395065:1 11/11 None
F57F4.1 ENSEMBL cdna:known chromosome:CEL140:V:6393095:6395065:1 gene:F57F4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6393094-6395065(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57F4.1
Entrez Gene 186453 Entrez gene
SwissProt Q94245 EMBL-EBI
WormBase CE11338 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248697_AT thioesterase family protein at
DROSOPHILA_2:1639484_AT dm
DROSGENOME1:155089_AT dm
MOE430A:1418073_AT acyl-CoA thioesterase 9 mm
MOUSE430A_2:1418073_AT acyl-CoA thioesterase 9 mm
MOUSE430_2:1418073_AT acyl-CoA thioesterase 9 mm
MOUSE430A_2:1449968_S_AT acyl-CoA thioesterase 9 mm
MOE430A:1449968_S_AT acyl-CoA thioesterase 9 mm
MOUSE430_2:1449968_S_AT acyl-CoA thioesterase 9 mm
MU11KSUBA:C76421_RC_AT acyl-CoA thioesterase 9 mm
MG-U74AV2:94850_AT acyl-CoA thioesterase 9 mm
MG-U74AV2:160171_F_AT acyl-CoA thioesterase 9 mm
MOUSE430A_2:1449968_S_AT acyl-CoA thioesterase 10 mm
MOE430A:1449968_S_AT acyl-CoA thioesterase 10 mm
MOUSE430_2:1449968_S_AT acyl-CoA thioesterase 10 mm
MU19KSUBB:TC28176_AT Acyl-CoA thioesterase 9, mRNA (cDNA clone MGC:30213 IMAGE:4458575) mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB09164 Hypothetical protein F57F4.1 [Caenorhabditis elegans] ref|NP_504625.1| F57F4.1 [Caenorhabditis elegans] 0.0
blast CAE71871 Hypothetical protein CBG18926 [Caenorhabditis briggsae] 0.0
blast AAB66189 Hypothetical protein T07D3.9a [Caenorhabditis elegans] ref|NP_493843.2| T07D3.9a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182663_AT
gaaatctgtttccctgaataccaaaatatgtatggaaaaatttttggaggttttcttatg
cgaaaggctcttgaattggcttacactaatgcaaagttgtattgtaaaggaagagttgca
gttcgatcaatggatcatattgaatttgctaaagcagttgaaattggttatgtgcttcac
ttggattcattcgtcacttacacagatgggaagtatctccaaatgaaagtggccgcatca
atttcagaccagaataagcttcctgagcttgccaagttgaaccacccaactcttggacaa
gaggcccgagttaacacgaatgttttcaattttacaatggaaagcgtggagaacccaaat
gtattgaccgtggtcccgaaacactatgtccatgccatcacatacctcgaaggtcgtcgt
cttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCTGTTTCCCTGAATACCAAA 231 363 943 Antisense
AGGCTCTTGAATTGGCTTACACTAA 3 55 1007 Antisense
TGTGCTTCACTTGGATTCATTCGTC 375 557 1113 Antisense
GGATTCATTCGTCACTTACACAGAT 263 509 1125 Antisense
GTGGCCGCATCAATTTCAGACCAGA 458 491 1171 Antisense
AGCTTCCTGAGCTTGCCAAGTTGAA 168 79 1199 Antisense
GTTGAACCACCCAACTCTTGGACAA 290 439 1218 Antisense
GGACAAGAGGCCCGAGTTAACACGA 445 511 1237 Antisense
ATTGACCGTGGTCCCGAAACACTAT 648 3 1305 Antisense
ACTATGTCCATGCCATCACATACCT 691 99 1325 Antisense
ATACCTCGAAGGTCGTCGTCTTTTG 191 1 1344 Antisense
Sequence Source Affymetrix Proprietary Database