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[182662_at]

Description Y37H2A.1 /REP_DB=WormBase Gene ID /WP=CE24206 /TR=Q9U2N7 /GB=CAB60573.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_high_8_8 > 53      6grp_highest_nonorm > 82      6grp_total > 38      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 422
(3)
P 		256.7
(-3)
M 		310.7
(-1)
P 		360.1
(0.8)
P 		165
B 339.3
(-0.9)
P 		414.4
(1.5)
P 		462.8
(3)
P 		272
(-3)
P 		191
C 330.7
(-0.8)
P 		425.8
(3)
P 		415.7
(2.6)
P 		274.6
(-3)
P 		151
avr 364
(0.9) 		365.6
(1) 		396.4
(3) 		302.2
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 427.5
(3)
P 		319
(-1.2)
P 		270.9
(-3)
P 		361.5
(0.5)
P 		318.2
(-1.2)
P 		386.5
(1.4)
P 		157
B 405.5
(3)
P 		349.4
(0.3)
P 		278.8
(-3)
P 		302.1
(-1.9)
P 		316.6
(-1.2)
P 		340.5
(-0.1)
P 		127
C 423.7
(3)
P 		270.7
(-3)
P 		284.9
(-2.4)
P 		345.4
(-0.1)
P 		361.8
(0.6)
P 		360.1
(0.5)
P 		153
avr 418.9
(3) 		313
(-1.5) 		278.2
(-3) 		336.3
(-0.5) 		332.2
(-0.7) 		362.4
(0.6) 		141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 153.6
(3)
P 		55.7
(-2.8)
M 		81.2
(-1.3)
P 		52.7
(-3)
P 		101
B 108.2
(3)
P 		102.3
(2.3)
P 		107.2
(2.9)
P 		58
(-3)
P 		50
C 109.5
(0.8)
P 		122.4
(1.6)
P 		144.9
(3)
P 		46.3
(-3)
P 		99
avr 123.8
(3) 		93.5
(0.5) 		111.1
(1.9) 		52.3
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 78.8
(-0.8)
P 		113.5
(3)
P 		59
(-3)
P 		91.7
(0.6)
P 		96
(1.1)
P 		94.1
(0.9)
P 		55
B 141.1
(3)
P 		116.3
(1)
P 		67.7
(-3)
P 		80
(-2)
P 		128.6
(2)
P 		127
(1.8)
P 		73
C 157.1
(3)
P 		82.6
(-2.1)
P 		72.5
(-2.8)
P 		69.5
(-3)
P 		117.1
(0.3)
P 		120.6
(0.5)
P 		88
avr 125.7
(3) 		104.1
(0.8) 		66.4
(-3) 		80.4
(-1.6) 		113.9
(1.8) 		113.9
(1.8) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182662_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13709
Sequence Type Exemplar sequence
Representative Public ID Y37H2A.1 NCBI
Target Description Y37H2A.1 /REP_DB=WormBase Gene ID /WP=CE24206 /TR=Q9U2N7 /GB=CAB60573.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075133(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075133 NCBI Caenorhabditis elegans Y37H2A.1 (Y37H2A.1) mRNA, complete cds. 11/11 None
SNAP00000043005 ENSEMBL cdna:SNAP chromosome:CEL140:V:18106780:18117164:1 9/11 None
GENEFINDER00000043015 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18116425:18117164:1 9/11 None
Y37H2A.1 ENSEMBL cdna:known chromosome:CEL140:V:18110844:18117291:1 gene:Y37H2A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043019 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18110849-18117164(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37H2A.1
Entrez Gene 180186 Entrez gene
SwissProt Q9U2N7 EMBL-EBI
WormBase CE24206 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60573 Hypothetical protein Y37H2A.1 [Caenorhabditis elegans] ref|NP_507534.1| Y37H2A.1 [Caenorhabditis elegans] 0.0
blast CAB60325 Hypothetical protein Y24F12A.1 [Caenorhabditis elegans] ref|NP_502188.1| Y24F12A.1 [Caenorhabditis elegans] 1.0E-118
blast T26559 hypothetical protein Y24F12A.b - Caenorhabditis elegans 1.0E-117
blast CAC14418 Hypothetical protein Y59A8B.14 [Caenorhabditis elegans] emb|CAC15862.2| Hypothetical protein Y59A8B.14 [Caenorhabditis elegans] ref|NP_507533.1| abnormal embryonic PARtitioning of cytoplasm family member (par-4) [Caenorhabditis elegans] gb|AAD45355.1| putative serine-threonine kinase PAR-4 [Caenorhabditis elegans] 1.0E-110
blast CAB60325 Hypothetical protein Y24F12A.1 [Caenorhabditis elegans] ref|NP_502188.1| Y24F12A.1 [Caenorhabditis elegans] 9.0E-88
blast CAB60573 Hypothetical protein Y37H2A.1 [Caenorhabditis elegans] ref|NP_507534.1| Y37H2A.1 [Caenorhabditis elegans] 5.0E-69
Protein Families
Method ID Description E-Value
hanks 1.1.1 AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); cAPKa 4.0E-5
Protein Domains
Database ID Description E-Value
Pfam IPR001130 EMBL-EBI TatD-related deoxyribonuclease 2.1E-75
Pfam IPR000719 EMBL-EBI Protein kinase 3.4E-17
Pfam IPR001130 EMBL-EBI TatD-related deoxyribonuclease 6.8E-36
Pfam IPR001130 EMBL-EBI TatD-related deoxyribonuclease 2.3E-20
Pfam IPR001130 EMBL-EBI TatD-related deoxyribonuclease 9.8E-31
Sequence
Target Sequence 
>C. ELEGANS:182662_AT
tcttctggcagacgcttgagcacattttatcgaatgcagccacgtggaaggtgttggccg
tcggagagtgtggactagatttacaccgttgtatatcggatctagaagtacagaaaatgg
tatttgagaagcatatcgatttggcatacaagtatcaattaccattagtcattcactgca
gaagtggacaaaaaggacgtgcagaagaacaatgcctgcgtattttgaagaagaaaatgg
acgaaaatcataaattcctgaaaatccaccgtcattgcttcacagagacttgggaagtgg
cacaaatgtggatgaaacagtgtccgaacgtctattttggctacacagcagccatcttca
aaatgcgtgaacgtcagcagctcgaagcgattcgtcatattccactaaatcgaattctcc
tggaaacggacgccccgtacttcagaccaccctgcttcgaaggagtcggcccgcgaaatg
tctgtctaccgggaatggcgattgcgacggcacggaaaatcgccgagattaaagaacttc
cagtcgatgaggtgcttcgtgcaacgtttgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTGGCAGACGCTTGAGCACAT 299 617 839 Antisense
CCACGTGGAAGGTGTTGGCCGTCGG 459 259 878 Antisense
TGAAAATCCACCGTCATTGCTTCAC 455 573 1097 Antisense
GTGTCCGAACGTCTATTTTGGCTAC 174 485 1158 Antisense
GCTACACAGCAGCCATCTTCAAAAT 281 303 1178 Antisense
GAACGTCAGCAGCTCGAAGCGATTC 7 349 1207 Antisense
TCGAAGGAGTCGGCCCGCGAAATGT 346 601 1295 Antisense
GCGAAATGTCTGTCTACCGGGAATG 246 289 1311 Antisense
AATGGCGATTGCGACGGCACGGAAA 62 163 1332 Antisense
GAACTTCCAGTCGATGAGGTGCTTC 346 349 1372 Antisense
GAGGTGCTTCGTGCAACGTTTGATA 108 403 1387 Antisense
Sequence Source Affymetrix Proprietary Database