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[182661_at]

Description C31A11.6 /REP_DB=WormBase Gene ID /WP=CE15657 /TR=O62081 /GB=CAB05688.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 28      6grp_cgc > 43      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 6.2
(-3)
A 		30
(-0.2)
A 		13.9
(-2.1)
A 		56.7
(3)
A 		51
B 55.5
(3)
A 		28.6
(-0.3)
A 		6.4
(-3)
A 		17
(-1.7)
A 		49
C 5
(-2.2)
A 		5.6
(-2)
A 		1.6
(-3)
A 		26.6
(3)
A 		25
avr 22.2
(0.4) 		21.4
(0.2) 		7.3
(-3) 		33.4
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 9.9
(-1.3)
A 		5.2
(-3)
A 		21.4
(3)
A 		15.2
(0.7)
A 		8.7
(-1.7)
A 		6
(-2.7)
A 		16
B 28.9
(3)
A 		5.4
(-2.1)
A 		1.2
(-3)
A 		6.6
(-1.8)
A 		5.9
(-2)
A 		3.9
(-2.4)
A 		28
C 2.8
(-2.9)
A 		43.5
(3)
A 		2.7
(-2.9)
A 		5.7
(-2.5)
A 		5
(-2.6)
A 		2.2
(-3)
A 		41
avr 13.9
(1.2) 		18
(3) 		8.4
(-1.1) 		9.2
(-0.8) 		6.5
(-1.9) 		4
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.3
(-3)
A 		6.5
(1.2)
A 		3.6
(-1.7)
A 		8.3
(3)
A 		6
B 17.7
(3)
A 		7.1
(-0.9)
A 		1.5
(-3)
A 		3.6
(-2.2)
A 		16
C 1.6
(-1.5)
A 		1.6
(-1.5)
A 		0.6
(-3)
A 		4.5
(3)
A 		4
avr 7.2
(3) 		5.1
(0.6) 		1.9
(-3) 		5.5
(1.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.8
(-2.4)
A 		1.9
(-2.3)
A 		4.7
(3)
A 		3.9
(1.5)
A 		2.6
(-0.9)
A 		1.5
(-3)
A 		3
B 10.1
(3)
A 		1.8
(-2.1)
A 		0.3
(-3)
A 		1.7
(-2.1)
A 		2.4
(-1.7)
A 		1.5
(-2.3)
A 		10
C 1
(-2.9)
A 		13.3
(3)
A 		0.7
(-3)
A 		1.2
(-2.8)
A 		1.6
(-2.6)
A 		0.7
(-3)
A 		13
avr 4.3
(1.1) 		5.7
(3) 		1.9
(-2.1) 		2.3
(-1.5) 		2.2
(-1.7) 		1.2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182661_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13875
Sequence Type Exemplar sequence
Representative Public ID C31A11.6 NCBI
Target Description C31A11.6 /REP_DB=WormBase Gene ID /WP=CE15657 /TR=O62081 /GB=CAB05688.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074718(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074718 NCBI Caenorhabditis elegans Serpentine Receptor, class XA family member (srxa-7) (srxa-7) mRNA, complete cds. 11/11 None
SNAP00000000584 ENSEMBL cdna:SNAP chromosome:CEL140:V:16310334:16317171:1 9/11 None
GENEFINDER00000000586 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16310265:16314742:1 11/11 None
C31A11.6 ENSEMBL cdna:known chromosome:CEL140:V:16310265:16312206:1 gene:C31A11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16310264-16312206(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srxa-7
Ensembl C31A11.6
Entrez Gene 183073 Entrez gene
SwissProt O62081 EMBL-EBI
WormBase CE15657 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05690 Hypothetical protein C31A11.7 [Caenorhabditis elegans] ref|NP_507120.2| C31A11.7 [Caenorhabditis elegans] 0.0
blast AAA68416 Hypothetical protein F18C5.7 [Caenorhabditis elegans] 0.0
blast F89402 protein Y94A7B.2 [imported] - Caenorhabditis elegans 0.0
blast CAB05687 Hypothetical protein C31A11.5 [Caenorhabditis elegans] ref|NP_507118.1| C31A11.5 [Caenorhabditis elegans] 0.0
blast CAB04331 Hypothetical protein F36G9.12 [Caenorhabditis elegans] ref|NP_507007.1| F36G9.12 [Caenorhabditis elegans] 0.0
blast CAB05688 Hypothetical protein C31A11.6 [Caenorhabditis elegans] ref|NP_507119.1| Serpentine Receptor, class XA family member (srxa-7) [Caenorhabditis elegans] 1.0E-167
blast CAE56646 Hypothetical protein CBG24408 [Caenorhabditis briggsae] 7.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 2.1E-92
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 2.1E-92
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 6.1E-10
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.3E-35
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 2.1E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507119.1 7 10-32,45-67,93-115,128-150,179-201,241-260,275-294
C31A11.6 7 10-32,45-67,93-115,128-150,179-201,241-260,275-294
SNAP00000000584 14 20-42,70-92,105-127,156-178,492-514,534-553,566-585,605-627,651-668,717-739,746-768,788-810,817-839,1208-1230
GENEFINDER00000000586 17 10-32,45-67,93-115,128-150,179-201,241-260,275-294,324-343,521-543,598-620,635-657,678-697,746-768,775-797,817-839,846-868,883-905
Sequence
Target Sequence 
>C. ELEGANS:182661_AT
ttttgattttgatcctctgcttcactctcctcctgatccctcgtctctcctactgcccag
tcaacttcctcgctagtacactggtcttcctgacggcatgtgctccagaaagacatcctg
tgacaaaattcacaaatatcaatgcaatctgggtgccgacgacccttctagtcatcaatg
tccttatgatgctccatttgaaagctcaccgctatgatttttacacgaggatacggcaaa
aatcgtcggttatttcaatgctgtcttcgagcagcttggcgcagagtcaactgaaaaggg
agaatatgctcatgcggcagacggttgcaatcacagttggactgtcgttttatgaagttg
gatctctgttaatgagaacgtttcctgacgcgtataacagtctacctcaatacgtgcggg
atttaacattttattttcgccttgagaccatatgtgccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGATTTTGATCCTCTGCTTCAC 30 679 410 Antisense
TTCCTGACGGCATGTGCTCCAGAAA 340 697 496 Antisense
GACGACCCTTCTAGTCATCAATGTC 238 379 567 Antisense
GATGCTCCATTTGAAAGCTCACCGC 10 413 597 Antisense
AGCTCACCGCTATGATTTTTACACG 486 79 612 Antisense
AATCGTCGGTTATTTCAATGCTGTC 76 169 650 Antisense
TGCTGTCTTCGAGCAGCTTGGCGCA 311 583 668 Antisense
TATGCTCATGCGGCAGACGGTTGCA 220 657 714 Antisense
AGAACGTTTCCTGACGCGTATAACA 361 71 784 Antisense
AACAGTCTACCTCAATACGTGCGGG 599 137 805 Antisense
TTCGCCTTGAGACCATATGTGCCAT 430 697 845 Antisense
Sequence Source Affymetrix Proprietary Database