[Home] | [Total List]

[182659_at]

Description ZK1010.6 /REP_DB=WormBase Gene ID /WP=CE15505 /TR=O18285 /GB=CAB04972.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 0      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 20.6
(-2.3)
A 		4
(-3)
A 		71.3
(-0.4)
A 		157.1
(3)
P 		153
B 34.7
(-2.6)
A 		50.6
(-0.3)
A 		31.9
(-3)
A 		74.2
(3)
P 		42
C 54.2
(-2.2)
A 		41.9
(-3)
A 		44.9
(-2.8)
A 		133.6
(3)
P 		92
avr 36.5
(-2.7) 		32.2
(-3) 		49.4
(-1.8) 		121.6
(3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 69.6
(2)
A 		19.1
(-3)
A 		24.7
(-2.4)
A 		34.3
(-1.5)
A 		79.2
(3)
A 		79.2
(3)
A 		60
B 41.6
(2.2)
A 		27.3
(-0.7)
A 		15.5
(-3)
A 		45.7
(3)
A 		29.5
(-0.2)
A 		24.1
(-1.3)
A 		30
C 42
(-0.7)
A 		32.4
(-1.9)
A 		34.3
(-1.7)
A 		23.6
(-3)
A 		43.2
(-0.6)
A 		72.1
(3)
M 		49
avr 51.1
(1.7) 		26.3
(-2.7) 		24.8
(-3) 		34.5
(-1.3) 		50.6
(1.6) 		58.5
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 7.5
(-1.2)
A 		0.9
(-3)
A 		18.6
(1.8)
A 		23
(3)
P 		22
B 11.1
(-0.4)
A 		12.5
(0.6)
A 		7.4
(-3)
A 		15.8
(3)
P 		8
C 18
(0.4)
A 		12
(-3)
A 		15.6
(-0.9)
A 		22.5
(3)
P 		11
avr 12.2
(-1.1) 		8.5
(-3) 		13.9
(-0.3) 		20.4
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 12.8
(-0.6)
A 		6.8
(-2.5)
A 		5.4
(-3)
A 		8.7
(-1.9)
A 		23.9
(3)
A 		19.3
(1.5)
A 		19
B 14.5
(3)
A 		9.1
(-0)
A 		3.8
(-3)
A 		12.1
(1.7)
A 		12
(1.6)
A 		9
(-0.1)
A 		11
C 15.6
(0.4)
A 		9.9
(-1.4)
A 		8.7
(-1.8)
A 		4.7
(-3)
A 		14
(-0.1)
A 		24.1
(3)
M 		19
avr 14.3
(1.3) 		8.6
(-1.6) 		6
(-3) 		8.5
(-1.7) 		16.6
(2.5) 		17.5
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182659_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6834
Sequence Type Exemplar sequence
Representative Public ID ZK1010.6 NCBI
Target Description ZK1010.6 /REP_DB=WormBase Gene ID /WP=CE15505 /TR=O18285 /GB=CAB04972.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067298(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067298 NCBI Caenorhabditis elegans ZK1010.6 (ZK1010.6) mRNA, complete cds. 11/11 None
SNAP00000035102 ENSEMBL cdna:SNAP chromosome:CEL140:III:12987188:12992008:1 9/11 None
GENEFINDER00000035112 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12987188:12992008:1 11/11 None
ZK1010.6 ENSEMBL cdna:known chromosome:CEL140:III:12986923:12991966:1 gene:ZK1010.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12986918-12991962(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1010.6
Entrez Gene 191491 Entrez gene
SwissProt O18285 EMBL-EBI
WormBase CE15505 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04972 Hypothetical protein ZK1010.6 [Caenorhabditis elegans] ref|NP_499699.1| ZK1010.6 [Caenorhabditis elegans] 0.0
blast CAB04972 Hypothetical protein ZK1010.6 [Caenorhabditis elegans] ref|NP_499699.1| ZK1010.6 [Caenorhabditis elegans] 1.0E-149
blast CAE69564 Hypothetical protein CBG15776 [Caenorhabditis briggsae] 7.0E-83
blast CAE69564 Hypothetical protein CBG15776 [Caenorhabditis briggsae] 5.0E-82
blast CAE69564 Hypothetical protein CBG15776 [Caenorhabditis briggsae] 1.0E-59
blast AAB52472 Hypothetical protein T10E9.4 [Caenorhabditis elegans] ref|NP_491879.1| T10E9.4 [Caenorhabditis elegans] 2.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR002593 EMBL-EBI Protein of unknown function DX 3.8E-41
Pfam IPR002593 EMBL-EBI Protein of unknown function DX 3.8E-41
Pfam IPR002593 EMBL-EBI Protein of unknown function DX 3.8E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499699.1 3 211-233,240-257,305-327
ZK1010.6 3 211-233,240-257,305-327
SNAP00000035102 2 185-207,271-293
GENEFINDER00000035112 3 257-279,286-303,351-373
Sequence
Target Sequence 
>C. ELEGANS:182659_AT
gtaaccgggactgctcaagtacatctgtatgtgtattcactaattcagttggcacttgct
ttgtggatcctatgttcacacctgaaccgttgaacttctatggacctctctggattgctc
tatacaccattatccctaccacttttctcattttcggattggtctgcggaattaatttct
ggaagaaggactctgtcatgatttttccgaatttcttcgtatttgttatagttattttgc
tgtctgctgatgcgaaaaagatttggaccaaggctgatttaccacagttcagacccaaaa
agccagtggaagagcccatcccaacaggcccacgaaatcgaatcgtcgagtggaaaaata
atttgaaattccaagaagtcagcccgaagaataatgttttctgtcggattttcgggcttt
gtgctcactattcaactggtgtagttgtgctgagcatgctctcaaaatggaaggatcgtg
gaatgatctacccgtacaaaaagtacgacggaacacctgattccaacttaccaatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACCGGGACTGCTCAAGTACATC 605 459 530 Antisense
GTTGGCACTTGCTTTGTGGATCCTA 530 435 577 Antisense
GTGGATCCTATGTTCACACCTGAAC 530 489 592 Antisense
GAACTTCTATGGACCTCTCTGGATT 316 349 621 Antisense
GATTGCTCTATACACCATTATCCCT 692 433 642 Antisense
CCTACCACTTTTCTCATTTTCGGAT 168 269 664 Antisense
GACTCTGTCATGATTTTTCCGAATT 121 375 718 Antisense
GTTATTTTGCTGTCTGCTGATGCGA 419 447 760 Antisense
TTTTCTGTCGGATTTTCGGGCTTTG 185 675 926 Antisense
TCGGGCTTTGTGCTCACTATTCAAC 550 605 941 Antisense
ACACCTGATTCCAACTTACCAATGA 9 111 1042 Antisense
Sequence Source Affymetrix Proprietary Database