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[182658_at] 7TM chemoreceptor, srw family

Description T04H1.10 /REP_DB=WormBase Gene ID /WP=CE13185 /TR=O18025 /GB=CAB01586.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 27      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 11.6
(-1.9)
A 		4.1
(-2.8)
A 		2.9
(-3)
A 		50.2
(3)
A 		47
B 5.3
(-2)
A 		11.8
(0.7)
A 		3
(-3)
A 		17.4
(3)
A 		14
C 4.8
(-2.9)
A 		38
(3)
A 		4.5
(-3)
A 		20
(-0.2)
A 		34
avr 7.2
(-2.1) 		18
(0.4) 		3.5
(-3) 		29.2
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5.7
(-1.7)
A 		4.6
(-2.1)
A 		21.4
(3)
A 		9
(-0.7)
A 		1.5
(-3)
A 		5.2
(-1.9)
A 		20
B 5.4
(-2.1)
A 		3.7
(-2.7)
A 		3.1
(-3)
A 		6.1
(-1.8)
A 		18.7
(3)
A 		3
(-3)
A 		16
C 6.2
(3)
A 		4.6
(0.3)
A 		3.7
(-1.2)
A 		2.6
(-3)
A 		3.5
(-1.5)
A 		4.4
(0)
A 		4
avr 5.8
(-1.2) 		4.3
(-2.9) 		9.4
(3) 		5.9
(-1) 		7.9
(1.3) 		4.2
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.2
(0.1)
A 		0.9
(-2.8)
A 		0.7
(-3)
A 		7.4
(3)
A 		7
B 1.7
(-1)
A 		2.9
(1.4)
A 		0.7
(-3)
A 		3.7
(3)
A 		3
C 1.6
(-3)
A 		10.9
(3)
A 		1.6
(-3)
A 		3.4
(-1.8)
A 		9
avr 2.5
(-0.7) 		4.9
(3) 		1
(-3) 		4.8
(2.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.1
(-2.1)
A 		1.6
(-1.4)
A 		4.7
(3)
A 		2.3
(-0.4)
A 		0.5
(-3)
A 		1.3
(-1.9)
A 		4
B 1.9
(-2)
A 		1.2
(-2.6)
A 		0.8
(-3)
A 		1.6
(-2.3)
A 		7.6
(3)
A 		1.1
(-2.7)
A 		7
C 2.3
(3)
A 		1.4
(0)
A 		0.9
(-1.7)
A 		0.5
(-3)
A 		1.1
(-1)
A 		1.5
(0.3)
A 		2
avr 1.8
(-1.3) 		1.4
(-2.7) 		2.1
(-0.3) 		1.5
(-2.3) 		3.1
(3) 		1.3
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182658_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12620
Sequence Type Exemplar sequence
Representative Public ID T04H1.10 NCBI
Target Description T04H1.10 /REP_DB=WormBase Gene ID /WP=CE13185 /TR=O18025 /GB=CAB01586.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073666(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073666 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-80) (srw-80) mRNA, complete cds. 11/11 None
SNAP00000026398 ENSEMBL cdna:SNAP chromosome:CEL140:V:12241900:12242904:1 11/11 None
GENEFINDER00000026411 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12239483:12244500:1 9/11 None
T04H1.10 ENSEMBL cdna:known chromosome:CEL140:V:12241526:12242904:1 gene:T04H1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12241525-12242904(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-80
Ensembl T04H1.10
Entrez Gene 188074 Entrez gene
SwissProt O18025 EMBL-EBI
WormBase CE13185 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01579 Hypothetical protein T04H1.1 [Caenorhabditis elegans] ref|NP_506066.1| T04H1.1 [Caenorhabditis elegans] 0.0
blast CAB01586 Hypothetical protein T04H1.10 [Caenorhabditis elegans] ref|NP_506067.1| Serpentine Receptor, class W family member (srw-80) [Caenorhabditis elegans] 1.0E-149
blast CAB01586 Hypothetical protein T04H1.10 [Caenorhabditis elegans] ref|NP_506067.1| Serpentine Receptor, class W family member (srw-80) [Caenorhabditis elegans] 1.0E-106
blast AAB69904 Hypothetical protein T02B11.6 [Caenorhabditis elegans] ref|NP_503350.1| T02B11.6 [Caenorhabditis elegans] 9.0E-87
blast CAB01586 Hypothetical protein T04H1.10 [Caenorhabditis elegans] ref|NP_506067.1| Serpentine Receptor, class W family member (srw-80) [Caenorhabditis elegans] 3.0E-85
blast CAB04139 Hypothetical protein F20E11.6 [Caenorhabditis elegans] ref|NP_507422.1| Serpentine Receptor, class W family member (srw-72) [Caenorhabditis elegans] 5.0E-33
blast CAB04139 Hypothetical protein F20E11.6 [Caenorhabditis elegans] ref|NP_507422.1| Serpentine Receptor, class W family member (srw-72) [Caenorhabditis elegans] 4.0E-31
blast CAB76728 Hypothetical protein W06G6.13 [Caenorhabditis elegans] ref|NP_507208.1| Serpentine Receptor, class W family member (srw-75) [Caenorhabditis elegans] 1.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 1.3E-62
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506067.1 5 20-42,72-94,165-187,208-230,245-267
T04H1.10 5 20-42,72-94,165-187,208-230,245-267
SNAP00000026398 4 13-35,81-103,131-153,168-190
GENEFINDER00000026411 13 10-32,64-86,106-125,172-194,204-226,239-261,266-288,301-323,333-355,395-417,461-483,510-532,595-617
Sequence
Target Sequence 
>C. ELEGANS:182658_AT
gtgtaattctgatcagttcccttccttctggtatctattatacaggatatgatttgattg
gtgcaccatgggatgaaaattgcacgggagtaccagaaaacttcactaatatgttttacg
atcaccagattggagaacatcctattatttcgatagacaattatcgatacacaactggga
gttttcggaatagttccgtttttttttttgaatcgtattggaattgtttgaatgattatt
tttcaaacttcgaaatgatcatcacaattgtttatccaatttttggtgcacttttaatgt
ttgaaatcattaaatctgcacgcttcgcatcagtgacactcagtagacaagatgcaatag
aacgatatcggtcgggaaggatgataatgtgcatgacaatcttctacacaatttcaagtc
ttcctggtggtgcatttgaatttatctggatattcattaatccacaatttaatacaattc
tccacatggttctcttgtatggcgatgtttgggttgatacatttttctgtttcaatgcgg
ctgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTAATTCTGATCAGTTCCCTTCC 644 485 248 Antisense
TCCCTTCCTTCTGGTATCTATTATA 180 599 265 Antisense
AATATGTTTTACGATCACCAGATTG 420 173 355 Antisense
ATCCAATTTTTGGTGCACTTTTAAT 551 39 521 Antisense
AAATCATTAAATCTGCACGCTTCGC 8 117 551 Antisense
CGCTTCGCATCAGTGACACTCAGTA 376 255 568 Antisense
TTCTACACAATTTCAAGTCTTCCTG 366 691 649 Antisense
AAGTCTTCCTGGTGGTGCATTTGAA 359 157 663 Antisense
TACAATTCTCCACATGGTTCTCTTG 485 641 720 Antisense
GGTTCTCTTGTATGGCGATGTTTGG 344 507 735 Antisense
TTTTTCTGTTTCAATGCGGCTGCAC 393 673 769 Antisense
Sequence Source Affymetrix Proprietary Database