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[182655_at] 7TM chemoreceptor, srx family

Description T01C4.4 /REP_DB=WormBase Gene ID /WP=CE12934 /TR=Q94296 /GB=AAB09179.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 10      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 304
1 2 3 4 range
A 4.6
(-3)
A 		41.9
(-1.7)
A 		41.2
(-1.7)
A 		172.8
(3)
P 		168
B 43.8
(-2.6)
A 		66.3
(-1.6)
A 		34.9
(-3)
A 		170
(3)
A 		135
C 57.6
(-2.1)
A 		55.2
(-2.1)
A 		12.5
(-3)
A 		308.2
(3)
P 		296
avr 35.3
(-2.8) 		54.5
(-2.2) 		29.5
(-3) 		217
(3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 10.2
(-2.7)
A 		49.1
(2.3)
A 		7.6
(-3)
A 		37
(0.8)
A 		40.1
(1.1)
A 		54.6
(3)
A 		47
B 36.7
(0.5)
A 		7.5
(-3)
A 		55.1
(2.7)
A 		35.2
(0.3)
A 		30.5
(-0.3)
A 		57.7
(3)
A 		50
C 43.6
(-0.6)
A 		57.4
(0.8)
A 		41
(-0.8)
A 		19.6
(-3)
A 		34.9
(-1.5)
A 		79.3
(3)
A 		60
avr 30.2
(-3) 		38
(-1.6) 		34.6
(-2.2) 		30.6
(-2.9) 		35.2
(-2.1) 		63.9
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 1.7
(-3)
A 		9.1
(-1.1)
A 		10.8
(-0.7)
A 		25.3
(3)
P 		24
B 14
(-1.7)
A 		16.4
(-1.2)
A 		8.1
(-3)
A 		36.2
(3)
A 		28
C 19.1
(-1.1)
A 		15.9
(-1.6)
A 		4.4
(-3)
A 		52
(3)
P 		48
avr 11.6
(-2.2) 		13.8
(-1.8) 		7.8
(-3) 		37.8
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 1.9
(-2.9)
A 		17.5
(3)
A 		1.7
(-3)
A 		9.4
(-0.1)
A 		12.1
(0.9)
A 		13.3
(1.4)
A 		16
B 12.8
(0.3)
A 		2.5
(-3)
A 		13.4
(0.4)
A 		9.3
(-0.9)
A 		12.4
(0.1)
A 		21.5
(3)
A 		19
C 16.2
(0.3)
A 		17.5
(0.6)
A 		10.4
(-1.3)
A 		3.9
(-3)
A 		11.3
(-1)
A 		26.5
(3)
A 		23
avr 10.3
(-1.7) 		12.5
(-0.7) 		8.5
(-2.5) 		7.5
(-3) 		11.9
(-1) 		20.4
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182655_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11844
Sequence Type Exemplar sequence
Representative Public ID T01C4.4 NCBI
Target Description T01C4.4 /REP_DB=WormBase Gene ID /WP=CE12934 /TR=Q94296 /GB=AAB09179.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072403(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072403 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-34) (srx-34) mRNA, complete cds. 11/11 None
GENEFINDER00000016308 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7121655:7123786:-1 11/11 None
T01C4.4 ENSEMBL cdna:known chromosome:CEL140:V:7121655:7122860:-1 gene:T01C4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7121655-7122503(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-34
Ensembl T01C4.4
Entrez Gene 187944 Entrez gene
SwissProt Q94296 EMBL-EBI
WormBase CE36561 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504804 Serpentine Receptor, class X family member (srx-34) [Caenorhabditis elegans] gb|AAB09179.2| Serpentine receptor, class x protein 34 [Caenorhabditis elegans] 1.0E-166
blast NP_504804 Serpentine Receptor, class X family member (srx-34) [Caenorhabditis elegans] gb|AAB09179.2| Serpentine receptor, class x protein 34 [Caenorhabditis elegans] 1.0E-128
blast NP_504805 Serpentine Receptor, class X family member (srx-35) [Caenorhabditis elegans] gb|AAB09180.2| Serpentine receptor, class x protein 35 [Caenorhabditis elegans] 3.0E-70
blast CAE72007 Hypothetical protein CBG19086 [Caenorhabditis briggsae] 4.0E-47
blast AAB66002 Serpentine receptor, class x protein 38 [Caenorhabditis elegans] ref|NP_504380.2| Serpentine Receptor, class X family member (srx-38) [Caenorhabditis elegans] 3.0E-40
blast CAE74807 Hypothetical protein CBG22638 [Caenorhabditis briggsae] 5.0E-40
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504804.2 7 4-26,39-61,81-103,123-142,176-195,215-237,247-269
T01C4.4 7 4-26,39-61,81-103,123-142,176-195,215-237,247-269
GENEFINDER00000016308 7 15-34,63-85,142-164,185-207,241-260,280-302,312-334
Sequence
Target Sequence 
>C. ELEGANS:182655_AT
agattcatcgctgttttcaaacctttttcttacaacacagtcttcaatccaagaacaact
cgagtgatcatattctcagttattactttatcacttttaattgttaactgctggttgttc
ataattgactgccggttctcttttgatgaagatcattggacatttctggttacggatagc
gatcattgtgatgtgtttgtctggacaacgattttagggaaaaatattatactatcgatt
gtgaatgtaatacttcatgtgataaccatgattaaagtgattactttgaaacaatttaaa
gctcgcacccaagtttctcgatcttacagtttgcaagaatcttattttttgaaacagacg
ttcggtcaaacactcttcatgtcaattgaaataattgctttctatttcccacctcgaagc
ttcgaaaatgaatactttgcctttctattctcaatgtttctttggtgtacgattcacgcg
gccgaaggtgtcatcacgttgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATTCATCGCTGTTTTCAAACCTT 666 65 94 Antisense
TTCTTACAACACAGTCTTCAATCCA 106 689 120 Antisense
TCATAATTGACTGCCGGTTCTCTTT 92 613 212 Antisense
GATCATTGGACATTTCTGGTTACGG 377 419 244 Antisense
ACAATTTAAAGCTCGCACCCAAGTT 665 113 384 Antisense
CACCCAAGTTTCTCGATCTTACAGT 502 195 399 Antisense
ACAGACGTTCGGTCAAACACTCTTC 16 109 447 Antisense
TATTTCCCACCTCGAAGCTTCGAAA 227 661 496 Antisense
ATACTTTGCCTTTCTATTCTCAATG 73 25 525 Antisense
TCTTTGGTGTACGATTCACGCGGCC 480 615 552 Antisense
GGCCGAAGGTGTCATCACGTTGATC 350 541 573 Antisense
Sequence Source Affymetrix Proprietary Database