[Home] | [Total List]

[182654_at]

Description C54D10.7 /REP_DB=WormBase Gene ID /WP=CE05503 /TR=Q18835 /GB=CAA99807.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 94      6grp_total > 84      4grp_total > 35      6grp_high1_sub > In      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 17.8
(-2.3)
A 		16.5
(-3)
A 		28.4
(3)
A 		22.4
(-0)
A 		12
B 22.3
(2)
A 		25
(3)
A 		20.6
(1.4)
A 		8.7
(-3)
A 		16
C 10
(-0.8)
A 		27.4
(3)
M 		0.2
(-3)
A 		24.4
(2.3)
A 		27
avr 16.7
(-2.7) 		23
(3) 		16.4
(-3) 		18.5
(-1.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 29.2
(-3)
A 		42.9
(-2)
P 		78.8
(0.7)
P 		110.6
(3)
P 		63.3
(-0.5)
P 		90.2
(1.5)
P 		81
B 42.1
(-3)
P 		55.3
(-2)
P 		82.2
(-0.1)
P 		81
(-0.2)
P 		124.7
(3)
P 		115.8
(2.4)
P 		83
C 47.7
(-2.9)
P 		46.9
(-3)
P 		46.8
(-3)
A 		80.3
(-0.6)
P 		132
(3)
P 		87.2
(-0.2)
P 		85
avr 39.7
(-3) 		48.4
(-2.2) 		69.3
(-0.3) 		90.6
(1.6) 		106.7
(3) 		97.7
(2.2) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 6.5
(1.7)
A 		3.6
(-2.6)
A 		7.4
(3)
A 		3.3
(-3)
A 		4
B 7.1
(3)
A 		6.2
(2)
A 		4.8
(0.3)
A 		1.9
(-3)
A 		5
C 3.3
(-0.5)
A 		7.9
(3)
M 		0.1
(-3)
A 		4.1
(0.1)
A 		8
avr 5.6
(2.4) 		5.9
(3) 		4.1
(-0.9) 		3.1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 5.4
(-3)
A 		15.3
(-0.4)
P 		17.2
(0.1)
P 		28.1
(3)
P 		19.1
(0.6)
P 		22
(1.4)
P 		23
B 14.7
(-3)
P 		18.4
(-2.4)
P 		20
(-2.1)
P 		21.5
(-1.9)
P 		50.7
(3)
P 		43.2
(1.8)
P 		36
C 17.7
(-1.9)
P 		14.3
(-2.5)
P 		11.9
(-3)
A 		16.1
(-2.2)
P 		42.7
(3)
P 		29.2
(0.4)
P 		31
avr 12.6
(-3) 		16
(-2.2) 		16.4
(-2.1) 		21.9
(-0.8) 		37.5
(3) 		31.5
(1.6) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182654_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12605
Sequence Type Exemplar sequence
Representative Public ID C54D10.7 NCBI
Target Description C54D10.7 /REP_DB=WormBase Gene ID /WP=CE05503 /TR=Q18835 /GB=CAA99807.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073719(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073719 NCBI Caenorhabditis elegans C54D10.7 (C54D10.7) mRNA, complete cds. 11/11 None
SNAP00000038024 ENSEMBL cdna:SNAP chromosome:CEL140:V:12440087:12443854:-1 10/11 None
C54D10.7 ENSEMBL cdna:known chromosome:CEL140:V:12440087:12446350:-1 gene:C54D10.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038032 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12440086-12446350(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54D10.7
Entrez Gene 183784 Entrez gene
SwissProt Q18835 EMBL-EBI
WormBase CE05503 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99807 Hypothetical protein C54D10.7 [Caenorhabditis elegans] ref|NP_506120.1| C54D10.7 [Caenorhabditis elegans] 0.0
blast CAE75486 Hypothetical protein CBG23490 [Caenorhabditis briggsae] 1.0E-64
blast CAE75486 Hypothetical protein CBG23490 [Caenorhabditis briggsae] 4.0E-59
blast CAE75488 Hypothetical protein CBG23492 [Caenorhabditis briggsae] 1.0E-48
blast CAE75489 Hypothetical protein CBG23493 [Caenorhabditis briggsae] 2.0E-33
Sequence
Target Sequence 
>C. ELEGANS:182654_AT
gaacgtaattggactaatcgattgaatgttcttagatcagcaaataaaaaggttgccgag
ttattcaatagatttttcactgagatatcaattattcaacgagagattgaaaaatcggag
gacatttctatggaaagaaaacgcgtttcaattgttttgaatacactcacaaattctttg
aaacaagaaaaagaactgatgactgaagaaatgaaaaatctccaaattcagtatgacaac
acaggaaaatcatttgtttggaaaattaaagaatccgttgaaatagttgcatatgagtgt
ggaattttcgagaatgtgttgagagaatattccaataaaatccaacagaaaaccttaact
tcatttgatcatgattctatcacaaaaaccatcaagtggcagttcgataatctgtcaaaa
ttctcgagaaacattcctacactggctgaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGTAATTGGACTAATCGATTGA 677 343 2896 Antisense
GATTGAATGTTCTTAGATCAGCAAA 81 435 2915 Antisense
AAGGTTGCCGAGTTATTCAATAGAT 191 161 2944 Antisense
AATCGGAGGACATTTCTATGGAAAG 73 165 3008 Antisense
GAATACACTCACAAATTCTTTGAAA 567 325 3054 Antisense
GAATCCGTTGAAATAGTTGCATATG 562 329 3166 Antisense
GAAAACCTTAACTTCATTTGATCAT 291 355 3243 Antisense
AAAACCATCAAGTGGCAGTTCGATA 522 129 3280 Antisense
AGTTCGATAATCTGTCAAAATTCTC 370 61 3296 Antisense
AATTCTCGAGAAACATTCCTACACT 156 177 3314 Antisense
GAAACATTCCTACACTGGCTGAATT 304 357 3323 Antisense
Sequence Source Affymetrix Proprietary Database