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[182653_at]

Description R07E4.3 /REP_DB=WormBase Gene ID /WP=CE04818 /TR=Q21817 /GB=AAA80402.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 42      4grp_highest_8_8 > 14      4grp_high_8_8 > 23      6grp_highest_nonorm > 26      6grp_total > 30      4grp_total > 16      6grp_highest_sub > 03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3503
1 2 3 4 range
A 3732.6
(-3)
P 		4872.5
(-0.4)
P 		4755
(-0.7)
P 		6404.1
(3)
P 		2672
B 4290.4
(-3)
P 		4766.4
(-1.8)
P 		6169.4
(1.7)
P 		6687.7
(3)
P 		2397
C 4512.3
(-3)
P 		4705.7
(-2.6)
P 		4837.4
(-2.3)
P 		7236
(3)
P 		2724
avr 4178.4
(-3) 		4781.5
(-1.6) 		5253.9
(-0.5) 		6775.9
(3) 		2598

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7311
1 2 3 4 5 6 range
A 3414.6
(-2.6)
P 		6382.4
(0.2)
P 		9233.8
(3)
P 		6691.5
(0.5)
P 		4051.1
(-2)
P 		3046.5
(-3)
P 		6187
B 4126.7
(-2.3)
P 		7489.2
(0.5)
P 		10357.2
(3)
P 		5633.3
(-1)
P 		4812.6
(-1.7)
P 		3350.3
(-3)
P 		7007
C 4578.2
(-1.9)
P 		6876.3
(3)
P 		5888.9
(0.9)
P 		5851.7
(0.8)
P 		4834.5
(-1.4)
P 		4087.1
(-3)
P 		2789
avr 4039.8
(-2.3) 		6916
(1.1) 		8493.3
(3) 		6058.8
(0.1) 		4566.1
(-1.7) 		3494.6
(-3) 		4999
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 749
1 2 3 4 range
A 1359.1
(3)
P 		1057.7
(-1.3)
P 		1243
(1.3)
P 		937.4
(-3)
P 		422
B 1368.2
(1.5)
P 		1177.2
(-3)
P 		1429.6
(3)
P 		1425.2
(2.9)
P 		252
C 1493.7
(0.5)
P 		1352.9
(-1.3)
P 		1686
(3)
P 		1220.1
(-3)
P 		466
avr 1407
(1.9) 		1195.9
(-3) 		1452.9
(3) 		1194.2
(-3) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1886
1 2 3 4 5 6 range
A 629.5
(-3)
P 		2269.9
(3)
P 		2010.9
(2.1)
P 		1697.1
(0.9)
P 		1222.4
(-0.8)
P 		741.7
(-2.6)
P 		1640
B 1435.9
(-2.1)
P 		2492.8
(2.9)
P 		2515
(3)
P 		1492.1
(-1.8)
P 		1955.3
(0.3)
P 		1249.3
(-3)
P 		1266
C 1697
(0.4)
P 		2098.2
(3)
P 		1498.8
(-0.9)
P 		1176.8
(-3)
P 		1564.4
(-0.5)
P 		1368.2
(-1.8)
P 		921
avr 1254.1
(-2.3) 		2287
(3) 		2008.2
(1.6) 		1455.3
(-1.3) 		1580.7
(-0.6) 		1119.7
(-3) 		1167
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182653_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16668
Sequence Type Exemplar sequence
Representative Public ID R07E4.3 NCBI
Target Description R07E4.3 /REP_DB=WormBase Gene ID /WP=CE04818 /TR=Q21817 /GB=AAA80402.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076595(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076595 NCBI Caenorhabditis elegans R07E4.3 (R07E4.3) mRNA, complete cds. 11/11 None
SNAP00000014985 ENSEMBL cdna:SNAP chromosome:CEL140:X:5953416:5953688:1 11/11 None
GENEFINDER00000014993 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5953416:5953688:1 11/11 None
R07E4.3 ENSEMBL cdna:known chromosome:CEL140:X:5953416:5953688:1 gene:R07E4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5953415-5953688(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07E4.3
Entrez Gene 180862 Entrez gene
SwissProt Q21817 EMBL-EBI
WormBase CE04818 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8121 ubiquinol-cytochrome-c reductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_508996 R07E4.3 [Caenorhabditis elegans] gb|AAA80402.1| Hypothetical protein R07E4.3 [Caenorhabditis elegans] 1.0E-49
blast CAB04384 Hypothetical protein F45H10.2 [Caenorhabditis elegans] ref|NP_496838.1| F45H10.2 [Caenorhabditis elegans] 8.0E-48
blast CAE68827 Hypothetical protein CBG14786 [Caenorhabditis briggsae] 3.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR004205 EMBL-EBI UcrQ 2.7E-48
Sequence
Target Sequence 
>C. ELEGANS:182653_AT
gccttcagccgttgcaatgggaaaacattttggaaatttgggaaaaatgtatggagagca
tagatttgcattggctccaaacgaacaaaaagcttataaaggattcttcgatcaggcatt
tgtgagaaccttcaaaacctacgtttgggatcaatggtactactacattccacaaactat
tggtgcatatcttctctacgattgggccaagaagacaaatgttgctgcaaaccgcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTTCAGCCGTTGCAATGGGAAAA 337 281 18 Antisense
GAGAGCATAGATTTGCATTGGCTCC 204 395 71 Antisense
GCATTGGCTCCAAACGAACAAAAAG 317 307 85 Antisense
ATTCTTCGATCAGGCATTTGTGAGA 282 11 120 Antisense
GGCATTTGTGAGAACCTTCAAAACC 492 535 132 Antisense
TTCAAAACCTACGTTTGGGATCAAT 516 683 148 Antisense
GGGATCAATGGTACTACTACATTCC 274 495 164 Antisense
ACTACATTCCACAAACTATTGGTGC 370 101 179 Antisense
CTATTGGTGCATATCTTCTCTACGA 364 223 194 Antisense
ATATCTTCTCTACGATTGGGCCAAG 141 21 204 Antisense
GACAAATGTTGCTGCAAACCGCAAA 31 367 231 Antisense
Sequence Source Affymetrix Proprietary Database