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[182651_at]

Description C50E3.2 /REP_DB=WormBase Gene ID /WP=CE08895 /TR=Q22933 /GB=AAB04888.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 16      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 7.1
(-3)
A 		44
(0)
A 		33.3
(-0.9)
A 		80.6
(3)
P 		74
B 35.6
(1.2)
P 		31.3
(0.7)
A 		49.8
(3)
A 		2.5
(-3)
A 		47
C 19.2
(-2.5)
A 		15.1
(-3)
A 		22
(-2.1)
A 		63.3
(3)
P 		48
avr 20.6
(-3) 		30.1
(-1) 		35
(0.1) 		48.8
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 14.9
(-0.6)
A 		5.2
(-3)
A 		15
(-0.6)
A 		25.3
(2)
A 		17.5
(0.1)
A 		29.3
(3)
A 		24
B 36.9
(3)
P 		16.7
(-0.7)
A 		23.5
(0.5)
A 		4.3
(-3)
A 		35.2
(2.7)
A 		5.4
(-2.8)
A 		33
C 26.2
(-1.1)
A 		23.4
(-1.5)
A 		29.2
(-0.6)
A 		52.5
(3)
A 		19.1
(-2.2)
A 		14.1
(-3)
A 		38
avr 26
(2.3) 		15.1
(-3) 		22.6
(0.7) 		27.4
(3) 		23.9
(1.3) 		16.3
(-2.4) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.6
(-3)
A 		9.5
(1.5)
A 		8.7
(1)
A 		11.8
(3)
P 		9
B 11.4
(2.9)
P 		7.7
(0.9)
A 		11.5
(3)
A 		0.5
(-3)
A 		11
C 6.3
(-1.1)
A 		4.3
(-3)
A 		7.7
(0.2)
A 		10.7
(3)
P 		6
avr 6.8
(-3) 		7.2
(-2) 		9.3
(3) 		7.7
(-0.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.7
(-2.1)
A 		1.9
(-3)
A 		3.3
(-1.4)
A 		6.4
(2.2)
A 		5.3
(0.9)
A 		7.1
(3)
A 		5
B 12.8
(2.3)
P 		5.6
(-1)
A 		5.7
(-0.9)
A 		1.2
(-3)
A 		14.3
(3)
A 		2
(-2.6)
A 		13
C 9.7
(2.1)
A 		7.1
(-0.6)
A 		7.4
(-0.3)
A 		10.6
(3)
A 		6.2
(-1.5)
A 		4.7
(-3)
A 		6
avr 8.4
(2.7) 		4.9
(-2.6) 		5.5
(-1.7) 		6.1
(-0.8) 		8.6
(3) 		4.6
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182651_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12288
Sequence Type Exemplar sequence
Representative Public ID C50E3.2 NCBI
Target Description C50E3.2 /REP_DB=WormBase Gene ID /WP=CE08895 /TR=Q22933 /GB=AAB04888.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072565(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072565 NCBI Caenorhabditis elegans C50E3.2 (C50E3.2) mRNA, complete cds. 11/11 None
GENEFINDER00000028559 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7612962:7614497:1 11/11 None
C50E3.2 ENSEMBL cdna:known chromosome:CEL140:V:7612962:7613555:1 gene:C50E3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7612962-7613556(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50E3.2
Entrez Gene 183654 Entrez gene
SwissProt Q22933 EMBL-EBI
WormBase CE08895 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504966 C50E3.2 [Caenorhabditis elegans] gb|AAB04888.1| Hypothetical protein C50E3.2 [Caenorhabditis elegans] 3.0E-95
blast NP_504966 C50E3.2 [Caenorhabditis elegans] gb|AAB04888.1| Hypothetical protein C50E3.2 [Caenorhabditis elegans] 3.0E-87
blast NP_504967 C50E3.1 [Caenorhabditis elegans] gb|AAB04889.1| Hypothetical protein C50E3.1 [Caenorhabditis elegans] 4.0E-43
blast AAY86245 Hypothetical protein C50E3.15 [Caenorhabditis elegans] 3.0E-36
blast AAY86245 Hypothetical protein C50E3.15 [Caenorhabditis elegans] 2.0E-25
blast AAB37927 Hypothetical protein F08D12.4 [Caenorhabditis elegans] ref|NP_494362.1| F08D12.4 [Caenorhabditis elegans] 6.0E-10
Sequence
Target Sequence 
>C. ELEGANS:182651_AT
atgtggacgctttatgtttttcttatatgcttctattccatttcatgcttaaccgattta
gacattttaaacgttgcactagaaaataacattttggtctttccctcaaatatcagtgaa
gcgtctggaatgaccctttttcatggaagaatagaaacaaagtcggaatgccggaaagtg
aatgcaactataaattcgacgctctgcactgtcatatgtggaaagctcgaagcttgccaa
gttgctctctggacatcagcaatgttttgtgatatatgtgagtatggatctgtaactatg
gtcgtgcaagagaaaacaaatgacaacgttgtggcattaaaaagaaattcttcaagtact
attttgagagaacccattgacaaatgccctgctccaagcattacatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGGACGCTTTATGTTTTTCTTA 691 49 13 Antisense
GTTTTTCTTATATGCTTCTATTCCA 523 449 28 Antisense
GCTTCTATTCCATTTCATGCTTAAC 669 305 41 Antisense
TAACATTTTGGTCTTTCCCTCAAAT 27 639 99 Antisense
GAAGCGTCTGGAATGACCCTTTTTC 598 341 130 Antisense
ATGCAACTATAAATTCGACGCTCTG 577 43 194 Antisense
GACGCTCTGCACTGTCATATGTGGA 372 381 210 Antisense
CGAAGCTTGCCAAGTTGCTCTCTGG 580 253 240 Antisense
GCTCTCTGGACATCAGCAATGTTTT 671 299 256 Antisense
GGATCTGTAACTATGGTCGTGCAAG 395 511 298 Antisense
ATGCCCTGCTCCAAGCATTACATTA 3 43 396 Antisense
Sequence Source Affymetrix Proprietary Database