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[182650_at] 7TM chemoreceptor, srb family

Description C27D6.8 /REP_DB=WormBase Gene ID /WP=CE06888 /GEN=srb-3 /GB=AAK68209.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 09      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 12.1
(-3)
A 		36.4
(-0.4)
A 		48.1
(0.9)
A 		67.4
(3)
P 		55
B 16.4
(-2.7)
A 		19.9
(-1.7)
A 		15.4
(-3)
A 		36.5
(3)
P 		21
C 33
(-0.9)
P 		14.6
(-2.6)
A 		10.1
(-3)
A 		76.7
(3)
P 		67
avr 20.5
(-3) 		23.6
(-2.5) 		24.5
(-2.4) 		60.2
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 34.5
(-0.2)
A 		7.4
(-3)
A 		64.6
(3)
P 		32.5
(-0.4)
A 		32.1
(-0.4)
P 		20.4
(-1.6)
A 		57
B 27.1
(0.8)
M 		38.2
(3)
P 		31.7
(1.7)
P 		13.1
(-2)
A 		34
(2.2)
P 		8.3
(-3)
A 		30
C 1.4
(-3)
A 		46.8
(3)
P 		33.7
(1.3)
P 		39.3
(2)
P 		28.5
(0.6)
P 		14
(-1.3)
A 		45
avr 21
(-1.6) 		30.8
(0.4) 		43.3
(3) 		28.3
(-0.1) 		31.5
(0.6) 		14.2
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.4
(-3)
A 		7.9
(-0.4)
A 		12.6
(3)
A 		9.9
(1)
P 		8
B 5.2
(-0.7)
A 		4.9
(-1.1)
A 		3.6
(-3)
A 		7.8
(3)
P 		4
C 10.9
(1.7)
P 		4.2
(-2.6)
A 		3.5
(-3)
A 		12.9
(3)
P 		9
avr 6.8
(-1.5) 		5.7
(-3) 		6.6
(-1.8) 		10.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.4
(-1)
A 		2.6
(-3)
A 		14.1
(3)
P 		8.2
(-0.1)
A 		9.7
(0.7)
P 		5
(-1.7)
A 		12
B 9.4
(0.5)
M 		12.7
(2.4)
P 		7.7
(-0.4)
P 		3.5
(-2.8)
A 		13.8
(3)
P 		3.1
(-3)
A 		11
C 0.5
(-3)
A 		14.3
(3)
P 		8.6
(0.5)
P 		7.9
(0.2)
P 		9.2
(0.8)
P 		4.7
(-1.2)
A 		14
avr 5.4
(-2) 		9.9
(2.1) 		10.1
(2.3) 		6.5
(-1) 		10.9
(3) 		4.3
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182650_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4999
Sequence Type Exemplar sequence
Representative Public ID C27D6.8 NCBI
Target Description C27D6.8 /REP_DB=WormBase Gene ID /WP=CE06888 /GEN=srb-3 /GB=AAK68209.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062562(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062562 NCBI Caenorhabditis elegans Serpentine Receptor, class B (beta) family member (srb-3) (srb-3) mRNA, complete cds. 11/11 None
C27D6.8 ENSEMBL cdna:known chromosome:CEL140:II:5165296:5166819:-1 gene:C27D6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5165293-5166817(-) 98.34 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srb family
Gene Symbol srb-3
Ensembl C27D6.8
Entrez Gene 191785 Entrez gene
SwissProt Q95ZY2 EMBL-EBI
WormBase CE06888 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494963 Serpentine Receptor, class B (beta) family member (srb-3) [Caenorhabditis elegans] gb|AAK68209.1| Serpentine receptor, class b (beta) protein 3 [Caenorhabditis elegans] sp|Q95ZY2|SRB3_CAEEL Serpentine receptor class beta-3 (Protein srb-3) prf||2123261Q chemosensory receptor 1.0E-175
blast T15653 hypothetical protein C27D6.2 - Caenorhabditis elegans 1.0E-126
blast CAE59057 Hypothetical protein CBG02340 [Caenorhabditis briggsae] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494963.1 7 27-49,62-84,99-121,141-163,186-208,240-262,272-294
C27D6.8 7 27-49,62-84,99-121,141-163,186-208,240-262,272-294
Sequence
Target Sequence 
>C. ELEGANS:182650_AT
agttctcgaacgtttcttggacctgttattatatttataattattgcagttgacttttcc
attattttttccgtctacaaaaatgagccttttactgagggtttttattcatttattcta
gttccatcgactacggcaagtcaaatcaatatgtatttctttgttttgttatttgtgaaa
atattcaacttacttcttaattgtatattattaagaattcataagaagatcagaatcaaa
tattattcattatcagttcgctacgaaatggaagaaattctacaatcgtccaagtttact
tttataattaggtttactcatttactattttttggattctacgttgtagtaatactcttt
gtgagaataatgggggaatcatttttcaatggaactttaaactattcagttgcacgtgga
gtattctgcactgttcctacttataatttaattatagttattattggtatcaaatcacta
cgacacttaaatttgcaacgactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTCTCGAACGTTTCTTGGACCTG 507 61 424 Antisense
GCAGTTGACTTTTCCATTATTTTTT 151 313 469 Antisense
TTATTCATTTATTCTAGTTCCATCG 493 679 528 Antisense
AGTTCCATCGACTACGGCAAGTCAA 446 61 543 Antisense
TATTATTCATTATCAGTTCGCTACG 415 661 664 Antisense
ATTCTACAATCGTCCAAGTTTACTT 455 9 700 Antisense
ACTCATTTACTATTTTTTGGATTCT 675 99 739 Antisense
AAACTATTCAGTTGCACGTGGAGTA 223 127 822 Antisense
ACGTGGAGTATTCTGCACTGTTCCT 91 95 837 Antisense
TCTGCACTGTTCCTACTTATAATTT 282 609 848 Antisense
ACGACACTTAAATTTGCAACGACTC 222 93 903 Antisense
Sequence Source Affymetrix Proprietary Database