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[182649_at] G-protein coupled receptor, srv family

Description H25K10.3 /REP_DB=WormBase Gene ID /WP=CE19935 /TR=Q9XU18 /GB=CAB07231.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 21      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 97
(1.8)
A 		41.1
(-3)
A 		53.1
(-2)
A 		111.3
(3)
A 		70
B 117.6
(3)
A 		113.1
(2.6)
A 		108.8
(2.2)
A 		54.5
(-3)
A 		63
C 92.9
(-2.6)
A 		132
(0.8)
A 		87.9
(-3)
A 		157.8
(3)
A 		70
avr 102.5
(1.7) 		95.4
(-0) 		83.3
(-3) 		107.9
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 41
(-2.6)
A 		83.3
(1.2)
A 		85.7
(1.4)
A 		79.8
(0.9)
A 		103.1
(3)
A 		36.4
(-3)
A 		67
B 71.6
(-0.4)
A 		119.1
(3)
A 		85.6
(0.6)
A 		78.9
(0.2)
A 		92.4
(1.1)
A 		34.4
(-3)
A 		85
C 88.5
(1.4)
A 		103.1
(2.6)
A 		86.9
(1.2)
A 		107.8
(3)
A 		54.6
(-1.5)
A 		37.4
(-3)
A 		70
avr 67
(-0.2) 		101.8
(3) 		86.1
(1.6) 		88.8
(1.8) 		83.4
(1.3) 		36.1
(-3) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 35.3
(3)
A 		8.9
(-3)
A 		13.9
(-1.9)
A 		16.3
(-1.3)
A 		26
B 37.5
(3)
A 		27.9
(0.8)
A 		25.2
(0.2)
A 		11.6
(-3)
A 		26
C 30.7
(-0.8)
A 		37.9
(3)
A 		30.6
(-0.9)
A 		26.6
(-3)
A 		11
avr 34.5
(3) 		24.9
(-0.5) 		23.2
(-1.2) 		18.2
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 7.6
(-3)
A 		29.6
(2.6)
A 		18.7
(-0.2)
A 		20.2
(0.2)
A 		31.1
(3)
A 		8.9
(-2.7)
A 		24
B 24.9
(-0.3)
A 		39.6
(3)
A 		20.8
(-1.2)
A 		20.9
(-1.2)
A 		37.6
(2.6)
A 		12.8
(-3)
A 		27
C 32.8
(3)
A 		31.5
(2.6)
A 		22.1
(-0.2)
A 		21.7
(-0.3)
A 		17.7
(-1.5)
A 		12.5
(-3)
A 		20
avr 21.8
(-0.2) 		33.6
(3) 		20.5
(-0.5) 		20.9
(-0.4) 		28.8
(1.7) 		11.4
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182649_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8416
Sequence Type Exemplar sequence
Representative Public ID H25K10.3 NCBI
Target Description H25K10.3 /REP_DB=WormBase Gene ID /WP=CE19935 /TR=Q9XU18 /GB=CAB07231.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070521(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070521 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-11) (srv-11) mRNA, complete cds. 11/11 None
GENEFINDER00000037543 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16219613:16221620:-1 11/11 None
H25K10.3 ENSEMBL cdna:known chromosome:CEL140:IV:16219613:16221620:-1 gene:H25K10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16219618-16221626(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srv family
Gene Symbol srv-11
Ensembl H25K10.3
Entrez Gene 186779 Entrez gene
SwissProt Q9XU18 EMBL-EBI
WormBase CE19935 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07231 Hypothetical protein H25K10.3 [Caenorhabditis elegans] ref|NP_502922.1| Serpentine Receptor, class V family member (srv-11) [Caenorhabditis elegans] 0.0
blast CAE68149 Hypothetical protein CBG13801 [Caenorhabditis briggsae] 1.0E-144
blast CAB60322 Hypothetical protein Y105C5B.6 [Caenorhabditis elegans] ref|NP_502895.2| Serpentine Receptor, class V family member (srv-15) [Caenorhabditis elegans] 1.0E-132
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502922.1 7 29-51,64-86,106-128,149-171,197-219,249-271,281-303
H25K10.3 7 29-51,64-86,106-128,149-171,197-219,249-271,281-303
GENEFINDER00000037543 7 29-51,64-86,106-128,149-171,197-219,249-271,281-303
Sequence
Target Sequence 
>C. ELEGANS:182649_AT
caaaacgtctccgaatagctgtcctgattcaatttgttccaggaatgattgccggttgcg
ctacgtttttcaatagtacccagctttatagaaatgcaaaaaatggattggttccgaaat
ttcaaaatgaagatcacgtcacctacttttttcttattgctggtgcaattctgacagttg
tctgtgtgtatttaataattgcatactcttatttgctagcagttttgaggaaaaacagta
atgctattaaagactctaacatgcaaaaatccaaaacacaaatcaagaaaaaagagatga
aattgtttataatgagcagtataacagtggtaattcaagttgccgcgctctgcctatttg
cgtcatatgcggcgtcgatccttgtcatctctcttgacaaattttatttgttgtataatg
caatgagtgatctctacgccggaatcaacccatatcttttatggatattctcagattctt
tacgaaagtatatactgattcaattgggattagccaaaggaagaatgaacccaacgtcta
gtgttattacggtcacaagtcgctcgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAACGTCTCCGAATAGCTGTCCT 217 191 452 Antisense
AGCTGTCCTGATTCAATTTGTTCCA 401 81 468 Antisense
TCCAGGAATGATTGCCGGTTGCGCT 259 591 489 Antisense
CCGGTTGCGCTACGTTTTTCAATAG 554 265 503 Antisense
GAAGATCACGTCACCTACTTTTTTC 547 335 580 Antisense
AGTGGTAATTCAAGTTGCCGCGCTC 516 59 777 Antisense
CGCTCTGCCTATTTGCGTCATATGC 631 255 797 Antisense
GATCCTTGTCATCTCTCTTGACAAA 75 417 828 Antisense
TGAGTGATCTCTACGCCGGAATCAA 62 569 875 Antisense
GAATGAACCCAACGTCTAGTGTTAT 422 329 974 Antisense
TATTACGGTCACAAGTCGCTCGCAT 248 661 996 Antisense
Sequence Source Affymetrix Proprietary Database