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[182647_at]

Description F41F3.2 /REP_DB=WormBase Gene ID /WP=CE07216 /TR=Q20280 /GB=AAA97980.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 67      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 83      6grp_total > 67      4grp_total > 02      6grp_highest_sub > Da      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 686
1 2 3 4 range
A 495.8
(-3)
P 		540.8
(-2.5)
P 		506.2
(-2.9)
P 		1000.6
(3)
P 		505
B 539.3
(-2.4)
P 		467
(-3)
P 		478.4
(-2.9)
P 		1137.6
(3)
P 		671
C 532.5
(-1.9)
P 		451.7
(-3)
P 		536.7
(-1.8)
P 		882.6
(3)
P 		431
avr 522.5
(-2.6) 		486.5
(-3) 		507.1
(-2.8) 		1006.9
(3) 		520

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 455.1
(0.1)
P 		410.8
(-1.1)
P 		342.3
(-3)
P 		355.8
(-2.6)
P 		355
(-2.7)
P 		563.2
(3)
P 		221
B 392.9
(-1.9)
P 		351
(-3)
P 		415.9
(-1.3)
P 		356.2
(-2.9)
P 		372.2
(-2.4)
P 		578.6
(3)
P 		228
C 346.2
(-3)
P 		400
(-1.6)
P 		364.9
(-2.5)
P 		370.7
(-2.4)
P 		368.4
(-2.4)
P 		575.8
(3)
P 		230
avr 398.1
(-1.9) 		387.3
(-2.3) 		374.4
(-2.6) 		360.9
(-3) 		365.2
(-2.9) 		572.5
(3) 		212
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 180.5
(3)
P 		117.4
(-3)
P 		132.3
(-1.6)
P 		146.5
(-0.2)
P 		63
B 172
(-0.2)
P 		115.4
(-2.8)
P 		110.9
(-3)
P 		242.4
(3)
P 		132
C 176.3
(1.9)
P 		129.9
(-3)
P 		187.1
(3)
P 		148.8
(-1)
P 		57
avr 176.3
(2.7) 		120.9
(-3) 		143.4
(-0.7) 		179.2
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 83.9
(-2.2)
P 		146.1
(3)
P 		74.5
(-3)
P 		90.2
(-1.7)
P 		107.1
(-0.3)
P 		137.1
(2.2)
P 		72
B 136.7
(-0.9)
P 		116.8
(-1.9)
P 		101
(-2.7)
P 		94.3
(-3)
P 		151.2
(-0.2)
P 		215.7
(3)
P 		121
C 128.3
(-0.3)
P 		122
(-0.6)
P 		92.9
(-2.1)
P 		74.6
(-3)
P 		119.2
(-0.7)
P 		192.7
(3)
P 		118
avr 116.3
(-1.1) 		128.3
(-0.4) 		89.5
(-2.8) 		86.4
(-3) 		125.8
(-0.5) 		181.8
(3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182647_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15335
Sequence Type Exemplar sequence
Representative Public ID F41F3.2 NCBI
Target Description F41F3.2 /REP_DB=WormBase Gene ID /WP=CE07216 /TR=Q20280 /GB=AAA97980.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071849(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071849 NCBI Caenorhabditis elegans Suppressor Of Clr family member (soc-1) (soc-1) mRNA, complete cds. 11/11 None
SNAP00000023060 ENSEMBL cdna:SNAP chromosome:CEL140:V:4640799:4646698:1 11/11 None
GENEFINDER00000023070 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4642784:4646698:1 11/11 None
F41F3.2 ENSEMBL cdna:known chromosome:CEL140:V:4642766:4646737:1 gene:F41F3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4642783-4646698(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol soc-1
Ensembl F41F3.2
Entrez Gene 178855 Entrez gene
SwissProt Q20280 EMBL-EBI
WormBase CE30786 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97980 Suppressor of clr protein 1 [Caenorhabditis elegans] ref|NP_504250.2| Suppressor Of Clr family member (soc-1) [Caenorhabditis elegans] gb|AAL15971.1| multisubstrate adaptor protein SOC-1 [Caenorhabditis elegans] 0.0
blast CAE64157 Hypothetical protein CBG08777 [Caenorhabditis briggsae] 1.0E-116
blast AAA97980 Suppressor of clr protein 1 [Caenorhabditis elegans] ref|NP_504250.2| Suppressor Of Clr family member (soc-1) [Caenorhabditis elegans] gb|AAL15971.1| multisubstrate adaptor protein SOC-1 [Caenorhabditis elegans] 1.0E-110
blast CAE64157 Hypothetical protein CBG08777 [Caenorhabditis briggsae] 1.0E-102
blast CAE64157 Hypothetical protein CBG08777 [Caenorhabditis briggsae] 7.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR001849 EMBL-EBI Pleckstrin-like 1.4E-12
Pfam IPR001849 EMBL-EBI Pleckstrin-like 3.3E-8
Sequence
Target Sequence 
>C. ELEGANS:182647_AT
aatatcaccggatgcatcatttcaaatcagtcatttctcataacagtctgccttcaaatc
caaactacaacaatttgccagaacggacaagtcggccgtcttcacatgatccccgccagt
acctcgatgggtcaagttgtcaaagtagaagacgccgaggatagtagtggagagacattg
aagcttgatacacccgagcaatatcctgaatcagtaacatcttcagaaggttttccagtt
tatgaaagaaacggaaaaacactgatacgacgagctccaccgccagtcgatcgatcgaat
aagcccaagaatttgagaggagaggaagaagctggaacacggtatcggaatttatcacga
aatggagtaaacgaaaacggcaactactcggcaactttttcaagtcgaacttcgaactac
caacaatcggaaacatcaaaacgaaggaaccttgactatttcgagccgactcaaatgatc
gaaaactcaagtctgagcacactcgcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATCACCGGATGCATCATTTCAA 354 173 904 Antisense
GTCATTTCTCATAACAGTCTGCCTT 591 467 933 Antisense
CAGTCTGCCTTCAAATCCAAACTAC 186 207 947 Antisense
CGCCAGTACCTCGATGGGTCAAGTT 150 257 1017 Antisense
GACATTGAAGCTTGATACACCCGAG 477 369 1077 Antisense
TACACCCGAGCAATATCCTGAATCA 435 643 1092 Antisense
AAACACTGATACGACGAGCTCCACC 647 127 1160 Antisense
CCACCGCCAGTCGATCGATCGAATA 105 275 1180 Antisense
GTCGAACTTCGAACTACCAACAATC 166 473 1307 Antisense
AGGAACCTTGACTATTTCGAGCCGA 414 55 1348 Antisense
AACTCAAGTCTGAGCACACTCGCGG 270 141 1387 Antisense
Sequence Source Affymetrix Proprietary Database