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[182646_s_at]

Description T23B3.1 /REP_DB=WormBase Gene ID /WP=CE14008 /TR=P91492 /GB=AAB42332.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 85      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 96      6grp_total > 75      4grp_total > 60      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 341
1 2 3 4 range
A 511.5
(-3)
P 		636.5
(0.2)
P 		747.9
(3)
P 		621.1
(-0.2)
P 		236
B 796.8
(2.8)
P 		733.6
(1.3)
P 		805.1
(3)
P 		556.9
(-3)
P 		248
C 829.5
(2.6)
P 		766
(1.4)
P 		852.6
(3)
P 		521.3
(-3)
P 		331
avr 712.6
(0.7) 		712
(0.7) 		801.9
(3) 		566.4
(-3) 		236

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 768
1 2 3 4 5 6 range
A 536.9
(-3)
P 		575.8
(-2.6)
P 		948
(1.2)
P 		776.1
(-0.6)
P 		731.8
(-1)
P 		1129.6
(3)
P 		593
B 525.6
(-3)
P 		645.4
(-1.9)
P 		1188.8
(3)
P 		856.9
(-0)
P 		965.6
(1)
P 		1081.1
(2)
P 		663
C 449.7
(-3)
P 		570
(-2.1)
P 		591.1
(-1.9)
P 		1014.1
(1.4)
P 		639.2
(-1.5)
P 		1217.3
(3)
P 		768
avr 504.1
(-3) 		597.1
(-2.1) 		909.3
(0.8) 		882.4
(0.6) 		778.9
(-0.4) 		1142.7
(3) 		639
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 186.2
(2.5)
P 		138.2
(-0.3)
P 		195.5
(3)
P 		90.9
(-3)
P 		105
B 254.1
(3)
P 		181.2
(-0.2)
P 		186.6
(0)
P 		118.7
(-3)
P 		135
C 274.6
(2.4)
P 		220.2
(0.8)
P 		297.2
(3)
P 		87.9
(-3)
P 		209
avr 238.3
(3) 		179.9
(0.5) 		226.4
(2.5) 		99.2
(-3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 99
(-3)
P 		204.8
(0.6)
P 		206.4
(0.7)
P 		196.8
(0.3)
P 		220.8
(1.2)
P 		275
(3)
P 		176
B 182.9
(-3)
P 		214.8
(-2.1)
P 		288.7
(-0.1)
P 		227
(-1.8)
P 		392.3
(2.7)
P 		403.2
(3)
P 		220
C 166.7
(-2.6)
P 		173.9
(-2.5)
P 		150.5
(-3)
P 		203.9
(-1.8)
P 		206.8
(-1.7)
P 		407.5
(3)
P 		257
avr 149.5
(-3) 		197.8
(-1.6) 		215.2
(-1.1) 		209.2
(-1.3) 		273.3
(0.5) 		361.9
(3) 		212
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182646_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.861
Sequence Type Exemplar sequence
Representative Public ID T23B3.1 NCBI
Target Description T23B3.1 /REP_DB=WormBase Gene ID /WP=CE14008 /TR=P91492 /GB=AAB42332.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059522(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059522 NCBI Caenorhabditis elegans T23B3.1 (T23B3.1) mRNA, complete cds. 11/11 None
SNAP00000020986 ENSEMBL cdna:SNAP chromosome:CEL140:I:6725963:6727320:1 11/11 None
GENEFINDER00000020990 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6725963:6727320:1 11/11 None
T23B3.1 ENSEMBL cdna:known chromosome:CEL140:I:6725963:6727546:1 gene:T23B3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6725891-6727249(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23B3.1
Entrez Gene 172388 Entrez gene
SwissProt P91492 EMBL-EBI
WormBase CE14008 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42332 Hypothetical protein T23B3.1 [Caenorhabditis elegans] ref|NP_491923.1| T23B3.1 [Caenorhabditis elegans] 0.0
blast CAE67262 Hypothetical protein CBG12709 [Caenorhabditis briggsae] 1.0E-114
Sequence
Target Sequence 
>C. ELEGANS:182646_S_AT
ggtagcgtgcccgaaaggagattacgggcttgctagaatgattgttgaagttggaagtgg
taagcgacagcttcgatctgaaacttcaattgcattcaaaaatggagaggatgaaaagct
tggacgattcattccattcgaagtttcttcgcctgattacgacttccgtccaacatatat
tttcttcttcttctgcattttctatgtgaacagaacgaaaattgaaaaacgtggaatgcg
aattgccaactgcagtgtccagtgtgttctcccaccgatgccggacgacctgaataaaat
cgaatgtagcgaaggatatccagctgaaggatacgatagtccactctacaattgtgaata
tacagctaatactcacaatgatccagaatatttggtctcattgaagcagaatttcttttc
cgttttggaaaatgcaaagggcatcagagatgcggatactgagcgtactga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTAGCGTGCCCGAAAGGAGATTAC 461 503 555 Antisense
GCGACAGCTTCGATCTGAAACTTCA 611 289 618 Antisense
GAAGTTTCTTCGCCTGATTACGACT 379 337 694 Antisense
GATTACGACTTCCGTCCAACATATA 635 427 709 Antisense
AACATATATTTTCTTCTTCTTCTGC 144 137 726 Antisense
GGAATGCGAATTGCCAACTGCAGTG 276 533 787 Antisense
AACTGCAGTGTCCAGTGTGTTCTCC 702 141 802 Antisense
ACCGATGCCGGACGACCTGAATAAA 260 89 828 Antisense
GATACGATAGTCCACTCTACAATTG 444 423 884 Antisense
TGAAGCAGAATTTCTTTTCCGTTTT 39 575 956 Antisense
GAGATGCGGATACTGAGCGTACTGA 511 395 1001 Antisense
Sequence Source Affymetrix Proprietary Database