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[182644_s_at]

Description C41H7.5 /REP_DB=WormBase Gene ID /WP=CE08676 /TR=O17150 /GB=AAB70936.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 34      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 51      6grp_total > 01      4grp_total > 52      6grp_highest_sub > 02      6grp_high1_sub > 02      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 572
1 2 3 4 range
A 821.5
(1.3)
P 		980.6
(3)
P 		689.8
(-0.1)
P 		408.9
(-3)
P 		572
B 803.4
(3)
P 		781.3
(2.5)
P 		766.6
(2.2)
P 		510
(-3)
P 		293
C 919
(3)
P 		672.4
(-0.3)
P 		830
(1.8)
P 		468.2
(-3)
P 		451
avr 848
(3) 		811.4
(2.4) 		762.1
(1.7) 		462.4
(-3) 		386

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 546
1 2 3 4 5 6 range
A 512.2
(-0.4)
P 		744.8
(3)
P 		554
(0.2)
P 		331.2
(-3)
P 		428.7
(-1.6)
P 		411.4
(-1.8)
P 		414
B 548.4
(-0.7)
P 		877.2
(3)
P 		564.8
(-0.5)
P 		338.1
(-3)
P 		407.9
(-2.2)
P 		668
(0.7)
P 		539
C 523.9
(0.1)
P 		704.7
(3)
P 		422.4
(-1.6)
P 		335.5
(-3)
P 		464.8
(-0.9)
P 		458.8
(-1)
P 		369
avr 528.2
(-0.4) 		775.6
(3) 		513.7
(-0.6) 		334.9
(-3) 		433.8
(-1.7) 		512.7
(-0.6) 		441
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 299.1
(3)
P 		212.9
(0.8)
P 		180.3
(0)
P 		59.9
(-3)
P 		239
B 256.2
(3)
P 		193
(0.4)
P 		177.6
(-0.2)
P 		108.7
(-3)
P 		148
C 304.2
(3)
P 		193.3
(0)
P 		289.3
(2.6)
P 		78.9
(-3)
P 		225
avr 286.5
(3) 		199.7
(0.4) 		215.7
(0.9) 		82.5
(-3) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 94.4
(-2.7)
P 		264.9
(3)
P 		120.7
(-1.8)
P 		84
(-3)
P 		129.4
(-1.5)
P 		100.2
(-2.5)
P 		181
B 190.8
(0)
P 		292
(3)
P 		137.2
(-1.6)
P 		89.5
(-3)
P 		165.7
(-0.7)
P 		249.1
(1.7)
P 		203
C 194.2
(2.2)
P 		215
(3)
P 		107.5
(-1.4)
P 		67.5
(-3)
P 		150.4
(0.4)
P 		153.6
(0.5)
P 		148
avr 159.8
(-0.3) 		257.3
(3) 		121.8
(-1.6) 		80.3
(-3) 		148.5
(-0.7) 		167.6
(-0) 		177
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182644_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5341
Sequence Type Exemplar sequence
Representative Public ID C41H7.5 NCBI
Target Description C41H7.5 /REP_DB=WormBase Gene ID /WP=CE08676 /TR=O17150 /GB=AAB70936.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062019(11), NM_062020(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062019 NCBI Caenorhabditis elegans C41H7.6 (C41H7.6) mRNA, complete cds. 11/11 A 
NM_062020 NCBI Caenorhabditis elegans C41H7.5 (C41H7.5) mRNA, complete cds. 11/11 A 
SNAP00000027504 ENSEMBL cdna:SNAP chromosome:CEL140:II:3000859:3002258:1 11/11 None
SNAP00000027506 ENSEMBL cdna:SNAP chromosome:CEL140:II:3002990:3003721:1 11/11 None
GENEFINDER00000027514 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3000859:3002336:1 11/11 None
GENEFINDER00000027516 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3002990:3005505:1 11/11 None
C41H7.6 ENSEMBL cdna:known chromosome:CEL140:II:3000846:3002406:1 gene:C41H7.6 11/11 A 
C41H7.5 ENSEMBL cdna:known chromosome:CEL140:II:3002990:3003795:1 gene:C41H7.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3002511-3003720(+) 99.49 100.0
Public Domain and Genome References
Gene Title

Ensembl C41H7.6
C41H7.5
Entrez Gene 173646 Entrez gene
173647 Entrez gene
SwissProt O17150 EMBL-EBI
O17149 EMBL-EBI
WormBase CE32164 Wormbase
CE08677 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70937 Hypothetical protein C41H7.6 [Caenorhabditis elegans] ref|NP_494420.1| C41H7.6 [Caenorhabditis elegans] 1.0E-157
blast AAB70937 Hypothetical protein C41H7.6 [Caenorhabditis elegans] ref|NP_494420.1| C41H7.6 [Caenorhabditis elegans] 1.0E-151
blast AAB70932 Hypothetical protein C41H7.4 [Caenorhabditis elegans] ref|NP_494422.1| C41H7.4 [Caenorhabditis elegans] 1.0E-145
blast AAB70936 Hypothetical protein C41H7.5 [Caenorhabditis elegans] ref|NP_494421.2| C41H7.5 [Caenorhabditis elegans] 1.0E-109
blast AAB70936 Hypothetical protein C41H7.5 [Caenorhabditis elegans] ref|NP_494421.2| C41H7.5 [Caenorhabditis elegans] 1.0E-102
blast AAB70937 Hypothetical protein C41H7.6 [Caenorhabditis elegans] ref|NP_494420.1| C41H7.6 [Caenorhabditis elegans] 3.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.8E-108
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000027514 1 320-342
Sequence
Target Sequence 
>C. ELEGANS:182644_S_AT
aacaatggaccggagaggatcagccgaccgacgacgatgacgatatcatctgtgatggga
ttttcgaggtggagatggttgatagaacacgcgaagctaagcaagaggaaaatcacgaga
atcacgaagagtaccacgtcgaggaggtctcgtatgctcaggatgagaacgtttatgagc
atcagcagcagaatcggcagaactacccaatgcacggcggaagtccctcaagcaactact
ccacgatctcggttgattctgtcaaacgccgccgctcaaccaccgtcgactctaccgccg
agcaaatcggtgaagaaattgaccgactcattcagctgtacccgcagcgtgagatgctca
ttaggcaggcgttcttcaaaactatctttgcgttggaggatgagacggtggaattttcga
atctcggggatttattcgaggatctcgccgaacaggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAATGGACCGGAGAGGATCAGCC 150 135 494 Antisense
GATGGGATTTTCGAGGTGGAGATGG 163 407 547 Antisense
GACTCTACCGCCGAGCAAATCGGTG 707 369 781 Antisense
GAAATTGACCGACTCATTCAGCTGT 139 365 808 Antisense
TCATTCAGCTGTACCCGCAGCGTGA 299 619 821 Antisense
TGTACCCGCAGCGTGAGATGCTCAT 656 559 830 Antisense
GATGCTCATTAGGCAGGCGTTCTTC 73 415 846 Antisense
GGCAGGCGTTCTTCAAAACTATCTT 268 535 857 Antisense
AAACTATCTTTGCGTTGGAGGATGA 272 127 872 Antisense
GACGGTGGAATTTTCGAATCTCGGG 476 375 897 Antisense
TTCGAGGATCTCGCCGAACAGGAGA 49 697 928 Antisense
Sequence Source Affymetrix Proprietary Database