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[182643_at]

Description C41H7.5 /REP_DB=WormBase Gene ID /WP=CE08676 /TR=O17150 /GB=AAB70936.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 22      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 205.7
(1.4)
P 		24.4
(-2.6)
A 		6.4
(-3)
A 		277.8
(3)
P 		271
B 239.4
(3)
P 		94.4
(-1.6)
A 		52.2
(-3)
A 		229
(2.7)
P 		187
C 209.8
(3)
P 		19.7
(-2.8)
A 		12.4
(-3)
A 		177.7
(2)
P 		197
avr 218.3
(2.7) 		46.2
(-2.3) 		23.7
(-3) 		228.2
(3) 		205

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 113.2
(3)
P 		77.1
(0.7)
P 		30.8
(-2.3)
A 		68.6
(0.1)
A 		21.5
(-2.9)
A 		20.5
(-3)
A 		93
B 73.5
(0.7)
P 		113.5
(3)
P 		71.4
(0.6)
P 		73.4
(0.7)
A 		59.9
(-0.1)
A 		8.7
(-3)
A 		105
C 97.5
(3)
P 		86.1
(2.2)
M 		10.8
(-3)
A 		11
(-3)
A 		10.7
(-3)
A 		44.1
(-0.7)
A 		87
avr 94.7
(3) 		92.2
(2.8) 		37.7
(-1.9) 		51
(-0.7) 		30.7
(-2.5) 		24.4
(-3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 74.9
(3)
P 		5.3
(-2.7)
A 		1.7
(-3)
A 		40.7
(0.2)
P 		73
B 76.4
(3)
P 		23.3
(-2)
A 		12.1
(-3)
A 		48.8
(0.4)
P 		64
C 69.5
(3)
P 		5.7
(-2.9)
A 		4.3
(-3)
A 		30
(-0.6)
P 		65
avr 73.6
(3) 		11.4
(-2.5) 		6
(-3) 		39.8
(0) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 20.9
(1.3)
P 		27.4
(3)
P 		6.7
(-2.5)
A 		17.4
(0.3)
A 		6.5
(-2.6)
A 		5
(-3)
A 		22
B 25.6
(0.9)
P 		37.8
(3)
P 		17.3
(-0.6)
P 		19.4
(-0.2)
A 		24.3
(0.7)
A 		3.2
(-3)
A 		35
C 36.1
(3)
P 		26.3
(1.3)
M 		2.8
(-2.9)
A 		2.2
(-3)
A 		3.5
(-2.8)
A 		14.8
(-0.8)
A 		34
avr 27.5
(2.2) 		30.5
(3) 		8.9
(-2.7) 		13
(-1.6) 		11.4
(-2) 		7.7
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182643_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5341
Sequence Type Exemplar sequence
Representative Public ID C41H7.5 NCBI
Target Description C41H7.5 /REP_DB=WormBase Gene ID /WP=CE08676 /TR=O17150 /GB=AAB70936.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062020(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062020 NCBI Caenorhabditis elegans C41H7.5 (C41H7.5) mRNA, complete cds. 11/11 A 
SNAP00000027506 ENSEMBL cdna:SNAP chromosome:CEL140:II:3002990:3003721:1 11/11 None
GENEFINDER00000027516 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3002990:3005505:1 11/11 None
C41H7.5 ENSEMBL cdna:known chromosome:CEL140:II:3002990:3003795:1 gene:C41H7.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3002511-3003720(+) 99.49 100.0
Public Domain and Genome References
Gene Title
Ensembl C41H7.5
Entrez Gene 173647 Entrez gene
SwissProt O17150 EMBL-EBI
WormBase CE32164 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70932 Hypothetical protein C41H7.4 [Caenorhabditis elegans] ref|NP_494422.1| C41H7.4 [Caenorhabditis elegans] 1.0E-145
blast AAB70936 Hypothetical protein C41H7.5 [Caenorhabditis elegans] ref|NP_494421.2| C41H7.5 [Caenorhabditis elegans] 1.0E-109
blast AAB70936 Hypothetical protein C41H7.5 [Caenorhabditis elegans] ref|NP_494421.2| C41H7.5 [Caenorhabditis elegans] 1.0E-102
blast AAB70937 Hypothetical protein C41H7.6 [Caenorhabditis elegans] ref|NP_494420.1| C41H7.6 [Caenorhabditis elegans] 3.0E-87
blast AAB70937 Hypothetical protein C41H7.6 [Caenorhabditis elegans] ref|NP_494420.1| C41H7.6 [Caenorhabditis elegans] 9.0E-81
blast AAB70932 Hypothetical protein C41H7.4 [Caenorhabditis elegans] ref|NP_494422.1| C41H7.4 [Caenorhabditis elegans] 1.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.8E-108
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:182643_AT
acaagaaattggatcgcgccgctaccgaggcggacctctggaattgggagttctaccgtc
actttctctactaccgtgagatgctcgatcggtttgaggcaaatcttcgcggcaaacaat
ggaccggagaggatcagccgaccgacgacgatgacgatatcatctgtgatgggattttcg
aggtggagatggttgatagaacacgcgaagctaagcaagaggaaaatcacgagaatcacg
aagagtaccacgtcgaggaggtctcgtatgctcaggatgagaacgtttatgagcatcagc
agcagaatcggcagaactacccaatgcacggcggaagtccctcaagcaactactccacga
tctcggttgattctgtcaaacgccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGAAATTGGATCGCGCCGCTAC 445 113 380 Antisense
GCTACCGAGGCGGACCTCTGGAATT 299 303 400 Antisense
TCTACTACCGTGAGATGCTCGATCG 13 615 446 Antisense
ATGCTCGATCGGTTTGAGGCAAATC 267 43 460 Antisense
GAGGCAAATCTTCGCGGCAAACAAT 373 403 475 Antisense
GAATCACGAAGAGTACCACGTCGAG 3 327 612 Antisense
GGAGGTCTCGTATGCTCAGGATGAG 615 515 636 Antisense
GAACGTTTATGAGCATCAGCAGCAG 648 347 660 Antisense
GAATCGGCAGAACTACCCAATGCAC 474 327 684 Antisense
AACTACTCCACGATCTCGGTTGATT 100 141 727 Antisense
TCGGTTGATTCTGTCAAACGCCGCC 649 603 742 Antisense
Sequence Source Affymetrix Proprietary Database