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[182642_s_at]

Description R09E10.7 /REP_DB=WormBase Gene ID /WP=CE06289 /TR=Q21875 /GB=CAA94301.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 07      4grp_highest_8_8 > 63      4grp_high_8_8 > 28      6grp_highest_nonorm > 31      6grp_total > 04      4grp_total > 35      6grp_cgc > 13      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 428
1 2 3 4 range
A 860.5
(-0.4)
P 		1105.8
(3)
P 		678.1
(-3)
P 		937.1
(0.6)
P 		428
B 716.7
(-2.8)
P 		954.4
(1.9)
P 		707.9
(-3)
P 		1010.7
(3)
P 		303
C 765
(-3)
P 		913.2
(3)
P 		824.4
(-0.6)
P 		794.9
(-1.8)
P 		148
avr 780.7
(-2) 		991.1
(3) 		736.8
(-3) 		914.2
(1.2) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 684
1 2 3 4 5 6 range
A 1330.4
(3)
P 		1066
(0.7)
P 		646.3
(-3)
P 		852.3
(-1.2)
P 		792.4
(-1.7)
P 		819.3
(-1.5)
P 		684
B 1302.8
(3)
P 		983
(-0.2)
P 		756.2
(-2.4)
P 		1022
(0.2)
P 		699.5
(-3)
P 		699.8
(-3)
P 		603
C 1162.6
(3)
P 		970.8
(0.6)
P 		911
(-0.2)
P 		1058.7
(1.7)
P 		817.2
(-1.3)
P 		683.9
(-3)
P 		479
avr 1265.3
(3) 		1006.6
(0.1) 		771.2
(-2.6) 		977.7
(-0.2) 		769.7
(-2.6) 		734.3
(-3) 		531
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 313.3
(3)
P 		240
(0.5)
P 		177.3
(-1.6)
P 		137.2
(-3)
P 		176
B 228.5
(2.4)
P 		235.7
(3)
P 		164
(-3)
P 		215.4
(1.3)
P 		72
C 253.2
(1.7)
P 		262.6
(2)
P 		287.3
(3)
P 		134
(-3)
P 		153
avr 265
(3) 		246.1
(1.9) 		209.5
(-0.2) 		162.2
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 313
1 2 3 4 5 6 range
A 245.2
(-0.4)
P 		379.1
(3)
P 		140.7
(-3)
P 		216.2
(-1.1)
P 		239.1
(-0.5)
P 		199.5
(-1.5)
P 		238
B 453.3
(3)
P 		327.2
(0.2)
P 		183.6
(-3)
P 		270.7
(-1.1)
P 		284.2
(-0.8)
P 		261
(-1.3)
P 		270
C 430.9
(3)
P 		296.2
(-0.7)
P 		231.9
(-2.5)
P 		212.9
(-3)
P 		264.4
(-1.6)
P 		229
(-2.6)
P 		218
avr 376.5
(3) 		334.2
(1.7) 		185.4
(-3) 		233.3
(-1.5) 		262.6
(-0.6) 		229.8
(-1.6) 		191
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182642_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9255
Sequence Type Exemplar sequence
Representative Public ID R09E10.7 NCBI
Target Description R09E10.7 /REP_DB=WormBase Gene ID /WP=CE06289 /TR=Q21875 /GB=CAA94301.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069487(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069487 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-55) (pqn-55) mRNA, complete cds. 11/11 None
SNAP00000005966 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10286977:10292651:1 11/11 None
GENEFINDER00000005979 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10286977:10292651:1 11/11 None
R09E10.7 ENSEMBL cdna:known chromosome:CEL140:IV:10286926:10292968:1 gene:R09E10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10285637-10292657(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-55
Ensembl R09E10.7
Entrez Gene 177915 Entrez gene
SwissProt Q21875 EMBL-EBI
WormBase CE37845 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1590617_AT similar to CG32542-PA cfa
CANINE:1583934_AT similar to CG32542-PA cfa
CANINE_2:CFA.11410.1.A1_S_AT similar to CG32542-PA cfa
CANINE_2:CFA.15756.1.S1_S_AT similar to CG32542-PA cfa
CANINE_2:CFAAFFX.23115.1.S1_X_AT similar to CG32542-PA cfa
DROSOPHILA_2:1635918_AT dm
DROSOPHILA_2:1633173_S_AT dm
DROSGENOME1:151357_AT dm
DROSGENOME1:145335_AT dm
DROSGENOME1:145334_AT dm
CHICKEN:GGA.17777.1.S1_S_AT similar to KIAA0913 protein gga
CHICKEN:GGAAFFX.26421.1.S1_AT similar to KIAA0913 protein gga
CHICKEN:GGAAFFX.26421.2.S1_S_AT similar to KIAA0913 protein gga
CHICKEN:GGAAFFX.3206.1.S1_S_AT similar to KIAA0913 protein gga
HG-U133_PLUS_2:216345_AT KIAA0913 hs
HG-U133A_2:216345_AT KIAA0913 hs
HG-U133A:216345_AT KIAA0913 hs
HU35KSUBC:RC_AA443585_AT KIAA0913 hs
U133_X3P:HS.65135.2.S1_3P_S_AT KIAA0913 hs
U133_X3P:HS.65135.0.S1_3P_A_AT KIAA0913 hs
U133_X3P:216345_3P_AT KIAA0913 hs
HG-U133A_2:212359_S_AT KIAA0913 hs
HG-U133_PLUS_2:212359_S_AT KIAA0913 hs
HG-U133A:212359_S_AT KIAA0913 hs
HG-U95AV2:35420_R_AT KIAA0913 hs
HG-U95B:54008_AT KIAA0913 hs
HG-U95D:71766_AT KIAA0913 hs
HG-U133_PLUS_2:214867_AT KIAA0913 hs
HG-U133A_2:214867_AT KIAA0913 hs
HG-U133A:214867_AT KIAA0913 hs
HG-U95AV2:32918_AT KIAA0913 hs
RG-U34A:RC_AA875438_AT similar to KIAA0913 protein (predicted) rn
RAE230A:1390315_A_AT similar to KIAA0913 protein (predicted) rn
RAT230_2:1390315_A_AT similar to KIAA0913 protein (predicted) rn
RAE230A:1380979_A_AT similar to KIAA0913 protein (predicted) rn
RAT230_2:1380979_A_AT similar to KIAA0913 protein (predicted) rn
RAE230A:1380980_AT similar to KIAA0913 protein (predicted) rn
RAT230_2:1380980_AT similar to KIAA0913 protein (predicted) rn
RAE230A:1376414_X_AT similar to KIAA0913 protein (predicted) rn
RAT230_2:1376414_X_AT similar to KIAA0913 protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA94301 Hypothetical protein R09E10.7 [Caenorhabditis elegans] ref|NP_501888.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-55) [Caenorhabditis elegans] 0.0
blast CAE60726 Hypothetical protein CBG04404 [Caenorhabditis briggsae] 0.0
blast XP_396843 PREDICTED: similar to ENSANGP00000014844 [Apis mellifera] 6.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR007527 EMBL-EBI SWIM Zn-finger 7.1E-8
Sequence
Target Sequence 
>C. ELEGANS:182642_S_AT
acttggtggtccttatcttcacagcttctattcaaatgcgtcacgatcagttctttcgcc
ctatattcttcatcagtttgcgacagatagtgctagatatttccctcataggatgtttaa
tcaaaacctcccgggaggaaatgtaccgtatccactctttccaccaaacatggtcgctgt
tccatcaccaatgccctcaaatattcggtatccgaatatcagattctcgacacctggaca
gattacaactctattcatagcgaatgggttccagccgattactggtgaactctatgaaag
atgttgtgagcagtacttacaggcaatcgtgaacaagatgaatagtccacgtgtcacttc
tgatgttgagtatatcaatcaattgctggaattcattcaacgcgccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTGGTGGTCCTTATCTTCACAGC 17 105 4842 Antisense
CACAGCTTCTATTCAAATGCGTCAC 335 195 4861 Antisense
ATGCGTCACGATCAGTTCTTTCGCC 591 41 4877 Antisense
CGCCCTATATTCTTCATCAGTTTGC 605 255 4898 Antisense
GGAAATGTACCGTATCCACTCTTTC 518 527 4978 Antisense
TCCACTCTTTCCACCAAACATGGTC 226 587 4992 Antisense
TCACCAATGCCCTCAAATATTCGGT 491 625 5026 Antisense
TATCAGATTCTCGACACCTGGACAG 620 659 5058 Antisense
GCGAATGGGTTCCAGCCGATTACTG 243 289 5101 Antisense
GAATAGTCCACGTGTCACTTCTGAT 29 327 5181 Antisense
TGCTGGAATTCATTCAACGCGCCCA 98 583 5225 Antisense
Sequence Source Affymetrix Proprietary Database