[Home] | [Total List]

[182641_at]

Description Y60A3A.2 /REP_DB=WormBase Gene ID /WP=CE24525 /TR=Q9U201 /GB=CAB60390.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 26.4
(-3)
A 		64.4
(2.2)
A 		69.9
(3)
A 		51.2
(0.4)
A 		44
B 29.2
(0.2)
A 		37.4
(3)
A 		19.6
(-3)
A 		30.9
(0.8)
A 		18
C 32.1
(1.1)
A 		41.5
(3)
A 		17.6
(-1.8)
A 		11.4
(-3)
A 		30
avr 29.2
(-3) 		47.8
(3) 		35.7
(-0.9) 		31.2
(-2.4) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 17.3
(-1.7)
A 		6.6
(-2.8)
A 		63.9
(3)
A 		4.2
(-3)
A 		33.7
(-0)
A 		35.3
(0.1)
A 		60
B 5.3
(-2.7)
A 		3.4
(-3)
A 		39.3
(3)
A 		21.1
(-0)
A 		35.4
(2.3)
A 		26.8
(0.9)
A 		36
C 24
(0.1)
A 		28.4
(0.7)
A 		24.9
(0.3)
A 		10.9
(-1.7)
A 		1.6
(-3)
A 		44.6
(3)
A 		43
avr 15.5
(-2.3) 		12.8
(-2.9) 		42.7
(3) 		12.1
(-3) 		23.6
(-0.7) 		35.6
(1.6) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.6
(-1.8)
A 		14
(0.6)
A 		18.3
(3)
A 		7.5
(-3)
A 		11
B 9.3
(3)
A 		9.2
(2.9)
A 		4.5
(-3)
A 		6.6
(-0.4)
A 		5
C 10.6
(2.2)
A 		11.9
(3)
A 		6.1
(-0.5)
A 		1.9
(-3)
A 		10
avr 9.8
(1.2) 		11.7
(3) 		9.6
(1) 		5.3
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.2
(-2)
A 		2.4
(-2.4)
A 		13.9
(3)
A 		1.1
(-3)
A 		10.2
(1.3)
A 		8.6
(0.5)
A 		13
B 1.8
(-2.7)
A 		1.1
(-3)
A 		9.6
(0.8)
A 		5.6
(-1)
A 		14.4
(3)
A 		10
(1)
A 		13
C 8.9
(0.5)
A 		8.7
(0.4)
A 		6.3
(-0.6)
A 		2.2
(-2.3)
A 		0.5
(-3)
A 		14.9
(3)
A 		14
avr 4.6
(-1.8) 		4.1
(-2.2) 		9.9
(2) 		3
(-3) 		8.4
(1) 		11.2
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182641_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12666
Sequence Type Exemplar sequence
Representative Public ID Y60A3A.2 NCBI
Target Description Y60A3A.2 /REP_DB=WormBase Gene ID /WP=CE24525 /TR=Q9U201 /GB=CAB60390.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075467(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075467 NCBI Caenorhabditis elegans Y60A3A.2 (Y60A3A.2) mRNA, complete cds. 11/11 None
SNAP00000032816 ENSEMBL cdna:SNAP chromosome:CEL140:V:19980991:19981578:-1 11/11 None
GENEFINDER00000032839 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19980991:19984310:-1 11/11 None
Y60A3A.2 ENSEMBL cdna:known chromosome:CEL140:V:19980991:19981578:-1 gene:Y60A3A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19980990-19981578(-) 91.31 100.0
Public Domain and Genome References
Gene Title
Ensembl Y60A3A.2
Entrez Gene 190430 Entrez gene
SwissProt Q9U201 EMBL-EBI
WormBase CE24525 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60390 Hypothetical protein Y60A3A.2 [Caenorhabditis elegans] ref|NP_507868.1| Y60A3A.2 [Caenorhabditis elegans] 9.0E-85
blast CAB60390 Hypothetical protein Y60A3A.2 [Caenorhabditis elegans] ref|NP_507868.1| Y60A3A.2 [Caenorhabditis elegans] 4.0E-84
blast CAB63375 Hypothetical protein Y51A2A.7 [Caenorhabditis elegans] ref|NP_507583.1| Y51A2A.7 [Caenorhabditis elegans] 2.0E-34
blast CAB63375 Hypothetical protein Y51A2A.7 [Caenorhabditis elegans] ref|NP_507583.1| Y51A2A.7 [Caenorhabditis elegans] 6.0E-34
blast CAE18002 Hypothetical protein Y51A2A.11 [Caenorhabditis elegans] ref|NP_001024256.1| Y51A2A.11 [Caenorhabditis elegans] 2.0E-24
Sequence
Target Sequence 
>C. ELEGANS:182641_AT
ggcatgtcaaagtccggggttcagtttttcgacttcccttgtaaaggcattcttcgggaa
caacaaacatgacggtgcagaagccgcctgtcaagctcagggagccaaactttcgggatt
tcaaactaccgatgaatcaatgagagctacacacctcctcagagctgttatcaatcaggc
atcccctggcgctaacactgtagcctggcttggcgggatcagaaaagccagctgcccaac
tgtccagtcttgtaccccggctaacagttatcaatggacagatggccatacaactggcac
cgctggcttcacttttggcgttaatcaacctgatattcttggcggagtacaattctgcct
gacgcaaaatgtacacgcaaaagtcgactcgggcctcacttctgctcagtggcacttttt
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATGTCAAAGTCCGGGGTTCAGT 398 497 15 Antisense
ACATGACGGTGCAGAAGCCGCCTGT 518 105 81 Antisense
AGCTCAGGGAGCCAAACTTTCGGGA 269 79 108 Antisense
TACACACCTCCTCAGAGCTGTTATC 661 641 162 Antisense
AGCTGTTATCAATCAGGCATCCCCT 560 79 177 Antisense
AACACTGTAGCCTGGCTTGGCGGGA 612 111 208 Antisense
TCTTGTACCCCGGCTAACAGTTATC 530 615 262 Antisense
AGATGGCCATACAACTGGCACCGCT 494 67 294 Antisense
GGCGGAGTACAATTCTGCCTGACGC 455 541 355 Antisense
TACACGCAAAAGTCGACTCGGGCCT 314 639 386 Antisense
CACTTCTGCTCAGTGGCACTTTTTC 376 197 411 Antisense
Sequence Source Affymetrix Proprietary Database