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[182640_at]

Description C18G1.6 /REP_DB=WormBase Gene ID /WP=CE17422 /TR=O61919 /GB=AAC17753.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 53      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 106.1
(3)
M 		72.3
(0.9)
A 		70.2
(0.7)
A 		11.6
(-3)
A 		95
B 136
(3)
P 		77.7
(0.4)
A 		56.8
(-0.6)
A 		3.5
(-3)
A 		133
C 108.3
(3)
P 		97.7
(1.6)
P 		63.8
(-3)
A 		70
(-2.2)
A 		45
avr 116.8
(3) 		82.6
(0.7) 		63.6
(-0.6) 		28.4
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 90.6
(1.1)
A 		121.9
(3)
P 		113.2
(2.5)
P 		66.4
(-0.4)
A 		35.4
(-2.3)
A 		23.2
(-3)
A 		99
B 87
(0.3)
A 		121.5
(2.5)
P 		129.4
(3)
P 		90.7
(0.5)
A 		36.5
(-3)
A 		48.1
(-2.3)
A 		93
C 87.7
(0.5)
M 		118.2
(3)
P 		115.2
(2.8)
P 		61.7
(-1.7)
A 		46
(-3)
A 		50.9
(-2.6)
A 		72
avr 88.4
(0.6) 		120.5
(3) 		119.3
(2.9) 		72.9
(-0.5) 		39.3
(-3) 		40.7
(-2.9) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 38.6
(3)
M 		15.7
(-0.7)
A 		18.4
(-0.3)
A 		1.7
(-3)
A 		37
B 43.4
(3)
P 		19.2
(-0.4)
A 		13.2
(-1.3)
A 		0.8
(-3)
A 		43
C 35.9
(3)
P 		28.1
(1.1)
P 		22.2
(-0.4)
A 		11.8
(-3)
A 		24
avr 39.3
(3) 		21
(-0.2) 		17.9
(-0.7) 		4.8
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 16.7
(-1.2)
A 		43.4
(3)
P 		24.7
(0)
P 		16.8
(-1.2)
A 		10.7
(-2.2)
A 		5.6
(-3)
A 		38
B 30.3
(0.6)
A 		40.5
(3)
P 		31.4
(0.9)
P 		24
(-0.9)
A 		14.8
(-3)
A 		17.9
(-2.3)
A 		26
C 32.5
(2.1)
M 		36.1
(3)
P 		29.3
(1.3)
P 		12.4
(-3)
A 		14.9
(-2.4)
A 		17
(-1.8)
A 		24
avr 26.5
(-0.1) 		40
(3) 		28.5
(0.4) 		17.7
(-2) 		13.5
(-3) 		13.5
(-3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182640_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15331
Sequence Type Exemplar sequence
Representative Public ID C18G1.6 NCBI
Target Description C18G1.6 /REP_DB=WormBase Gene ID /WP=CE17422 /TR=O61919 /GB=AAC17753.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071875(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071875 NCBI Caenorhabditis elegans C18G1.6 (C18G1.6) mRNA, complete cds. 11/11 None
SNAP00000018226 ENSEMBL cdna:SNAP chromosome:CEL140:V:4750421:4753554:1 11/11 None
GENEFINDER00000018235 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4750421:4753554:1 11/11 None
C18G1.6 ENSEMBL cdna:known chromosome:CEL140:V:4750408:4753622:1 gene:C18G1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4750420-4753554(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18G1.6
Entrez Gene 182796 Entrez gene
SwissProt O61919 EMBL-EBI
WormBase CE17422 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17753 Hypothetical protein C18G1.6 [Caenorhabditis elegans] ref|NP_504276.1| C18G1.6 [Caenorhabditis elegans] 0.0
blast CAB04027 Hypothetical protein E03H4.5 [Caenorhabditis elegans] ref|NP_493148.1| E03H4.5 [Caenorhabditis elegans] 0.0
blast CAB05625 Hypothetical protein T15D6.12 [Caenorhabditis elegans] ref|NP_493143.1| T15D6.12 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504276.1 1 7-24
C18G1.6 1 7-24
SNAP00000018226 1 7-24
GENEFINDER00000018235 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:182640_AT
ggctatgaatctatgtatccttgacattaaaactaccataggaacagttgccgatttcga
tgaagttatggtacctcggaatggtacaatgttggattatgcgctaaaggaaatgactgg
gacaaaagttggagcattgtcatttggtaacaactatgttgcgatggagccaagcatcta
tgataatggcttttcgggagtctcggagccagttttcctagatggtggaggtccgtccaa
atacgtcttcaacgcgtctgtcatcgatattgctcaagttcattgggttaaaagtttctt
ggatcctacaaagactacaaaaggttctaatggtgcattgttgcatcttcgatttggcgc
aaaagggaaaaagaaagtgaagaagccgttcacatttttccctgacaatagctcacatca
tgttagaaatatgcaggagactgcaactgcaatatttaatggatcgctcccaaagttttc
atca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTATGAATCTATGTATCCTTGAC 705 537 780 Antisense
TAGGAACAGTTGCCGATTTCGATGA 710 651 818 Antisense
AATGGCTTTTCGGGAGTCTCGGAGC 447 161 964 Antisense
GTCTCGGAGCCAGTTTTCCTAGATG 578 469 979 Antisense
GGTGGAGGTCCGTCCAAATACGTCT 44 493 1003 Antisense
AAATACGTCTTCAACGCGTCTGTCA 664 115 1018 Antisense
GCGTCTGTCATCGATATTGCTCAAG 692 291 1033 Antisense
CATTGTTGCATCTTCGATTTGGCGC 590 217 1115 Antisense
TGAAGAAGCCGTTCACATTTTTCCC 295 573 1157 Antisense
TTTCCCTGACAATAGCTCACATCAT 453 669 1176 Antisense
TGGATCGCTCCCAAAGTTTTCATCA 302 551 1239 Antisense
Sequence Source Affymetrix Proprietary Database