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[182639_at]

Description C25F6.6 /REP_DB=WormBase Gene ID /WP=CE02498 /TR=Q18162 /GB=AAK39196.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 48      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 11.2
(-3)
A 		33.6
(-0.1)
A 		57.3
(3)
P 		19.8
(-1.9)
A 		46
B 5.5
(-3)
A 		62.1
(0.8)
A 		95.8
(3)
P 		6.7
(-2.9)
A 		90
C 22.5
(-0.9)
A 		44.5
(1.5)
A 		57.6
(3)
P 		3.8
(-3)
A 		54
avr 13.1
(-2.7) 		46.7
(0.7) 		70.2
(3) 		10.1
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 6.1
(-3)
A 		102.5
(3)
P 		45.6
(-0.5)
P 		37.4
(-1)
A 		82.7
(1.8)
P 		5.8
(-3)
A 		97
B 6.9
(-3)
A 		62.5
(2.4)
A 		24.7
(-1.3)
A 		64.1
(2.5)
P 		69.1
(3)
M 		13.8
(-2.3)
A 		62
C 8.7
(-2.9)
A 		76.2
(3)
P 		7.8
(-3)
A 		19.1
(-2)
A 		55
(1.1)
A 		20.8
(-1.9)
A 		68
avr 7.2
(-3) 		80.4
(3) 		26
(-1.5) 		40.2
(-0.3) 		68.9
(2.1) 		13.5
(-2.5) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 4.1
(-2.4)
A 		7.3
(-0.8)
A 		15
(3)
P 		2.9
(-3)
A 		12
B 1.7
(-2.9)
A 		15.3
(1)
A 		22.2
(3)
P 		1.4
(-3)
A 		21
C 7.4
(-0.9)
A 		12.8
(0.8)
A 		20.1
(3)
P 		0.6
(-3)
A 		20
avr 4.4
(-2) 		11.8
(0.5) 		19.1
(3) 		1.6
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 1.1
(-3)
A 		36.4
(3)
P 		9.9
(-1.5)
P 		9.5
(-1.6)
A 		25
(1.1)
P 		1.4
(-2.9)
A 		35
B 2.4
(-3)
A 		20.8
(1.3)
A 		6
(-2.2)
A 		17
(0.4)
P 		28.1
(3)
M 		5.2
(-2.3)
A 		26
C 3.2
(-2.7)
A 		23.3
(3)
P 		2
(-3)
A 		3.8
(-2.5)
A 		17.8
(1.5)
A 		7
(-1.6)
A 		21
avr 2.2
(-3) 		26.8
(3) 		6
(-2.1) 		10.1
(-1.1) 		23.6
(2.2) 		4.5
(-2.4) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182639_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16860
Sequence Type Exemplar sequence
Representative Public ID C25F6.6 NCBI
Target Description C25F6.6 /REP_DB=WormBase Gene ID /WP=CE02498 /TR=Q18162 /GB=AAK39196.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076524(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076524 NCBI Caenorhabditis elegans C25F6.6 (C25F6.6) mRNA, complete cds. 11/11 None
GENEFINDER00000000872 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5449996:5450788:-1 11/11 None
C25F6.6 ENSEMBL cdna:known chromosome:CEL140:X:5450227:5450788:-1 gene:C25F6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5450227-5450789(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C25F6.6
Entrez Gene 182897 Entrez gene
SwissProt Q18162 EMBL-EBI
WormBase CE02498 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE68754 Hypothetical protein CBG14686 [Caenorhabditis briggsae] 1.0E-100
blast AAK39196 Hypothetical protein C25F6.6 [Caenorhabditis elegans] ref|NP_508925.1| C25F6.6 [Caenorhabditis elegans] 2.0E-72
blast AAK39196 Hypothetical protein C25F6.6 [Caenorhabditis elegans] ref|NP_508925.1| C25F6.6 [Caenorhabditis elegans] 4.0E-66
blast AAA98702 G01D9.6 [Caenorhabditis briggsae] 8.0E-59
blast CAE68754 Hypothetical protein CBG14686 [Caenorhabditis briggsae] 3.0E-57
blast AAA98702 G01D9.6 [Caenorhabditis briggsae] 1.0E-56
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508925.1 1 10-32
C25F6.6 1 10-32
Sequence
Target Sequence 
>C. ELEGANS:182639_AT
atgatctccagatttttgtccaaaatattaattgtttcttgtctaattggtgtactggga
gttgctgatgctagttcttctatgtatgccaggcggagaaccgccagcgaaagacttatg
tctataattcgacctagaatgtttcaaaacccggagtttagatcaagtcagaaaattcaa
aaatcaattcaactgaacccaaatcgagcccttccttgctgtaaggatgaatctggtggt
tcaatttgcaaaaatctacgcagaactgacattaaacttttcactcagaaatgtcaaact
gaacctgacttttcccttgttgtatgttgcagttcttgcagtgacgctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATCTCCAGATTTTTGTCCAAAA 245 47 16 Antisense
GTTTCTTGTCTAATTGGTGTACTGG 416 449 49 Antisense
GGAGTTGCTGATGCTAGTTCTTCTA 415 517 73 Antisense
AGTTCTTCTATGTATGCCAGGCGGA 128 65 88 Antisense
GAACCGCCAGCGAAAGACTTATGTC 80 347 113 Antisense
TTCAACTGAACCCAAATCGAGCCCT 401 685 203 Antisense
CGAGCCCTTCCTTGCTGTAAGGATG 706 249 220 Antisense
GAACTGACATTAAACTTTTCACTCA 108 349 278 Antisense
TCAAACTGAACCTGACTTTTCCCTT 537 625 309 Antisense
GACTTTTCCCTTGTTGTATGTTGCA 585 371 322 Antisense
GTTGCAGTTCTTGCAGTGACGCTGG 509 439 341 Antisense
Sequence Source Affymetrix Proprietary Database