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[182637_at]

Description Y60A3A.6 /REP_DB=WormBase Gene ID /WP=CE24530 /TR=Q9U1Z7 /GB=CAB60394.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 40      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 15
(-3)
A 		15.5
(-2.9)
A 		34
(1.2)
A 		42
(3)
A 		27
B 1.8
(-3)
A 		25.8
(-0.3)
A 		55.4
(3)
A 		25.2
(-0.4)
A 		54
C 19.3
(0.7)
A 		28.9
(3)
A 		8.1
(-2)
A 		3.8
(-3)
A 		25
avr 12
(-3) 		23.4
(0.3) 		32.5
(3) 		23.7
(0.4) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 3.4
(-2.5)
A 		6.7
(-1.7)
A 		24.1
(3)
A 		3.9
(-2.4)
A 		11.8
(-0.3)
A 		1.7
(-3)
A 		22
B 19.3
(3)
A 		2.7
(-2.5)
A 		10.8
(0.2)
A 		4.4
(-1.9)
A 		9
(-0.4)
A 		1.1
(-3)
A 		18
C 3.9
(-2.7)
A 		14
(-0.4)
A 		29
(3)
A 		2.6
(-3)
A 		16.9
(0.3)
A 		11.9
(-0.9)
A 		26
avr 8.9
(-1.2) 		7.8
(-1.6) 		21.3
(3) 		3.6
(-3) 		12.6
(0.1) 		4.9
(-2.6) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.5
(-0.7)
A 		3.4
(-3)
A 		8.9
(3)
A 		6.1
(-0.1)
A 		6
B 0.6
(-3)
A 		6.4
(-0.1)
A 		12.8
(3)
A 		5.4
(-0.6)
A 		12
C 6.4
(1.5)
A 		8.3
(3)
A 		2.8
(-1.3)
A 		0.6
(-3)
A 		8
avr 4.2
(-2.7) 		6
(-0.1) 		8.2
(3) 		4
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.6
(-2.8)
A 		2.4
(-0.5)
A 		5.2
(3)
A 		1
(-2.3)
A 		3.6
(1)
A 		0.4
(-3)
A 		5
B 6.7
(3)
A 		0.9
(-2.5)
A 		2.6
(-0.9)
A 		1.2
(-2.2)
A 		3.7
(0.1)
A 		0.4
(-3)
A 		6
C 1.4
(-2.2)
A 		4.3
(0.3)
A 		7.4
(3)
A 		0.5
(-3)
A 		5.5
(1.3)
A 		4
(0)
A 		7
avr 2.9
(-0.1) 		2.5
(-0.7) 		5.1
(3) 		0.9
(-3) 		4.3
(1.9) 		1.6
(-2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182637_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14264
Sequence Type Exemplar sequence
Representative Public ID Y60A3A.6 NCBI
Target Description Y60A3A.6 /REP_DB=WormBase Gene ID /WP=CE24530 /TR=Q9U1Z7 /GB=CAB60394.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075463(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075463 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-172) (srh-172) mRNA, complete cds. 11/11 None
SNAP00000032805 ENSEMBL cdna:SNAP chromosome:CEL140:V:19956999:19959654:1 9/11 None
Y60A3A.6 ENSEMBL cdna:known chromosome:CEL140:V:19957041:19958913:1 gene:Y60A3A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19956998-19958913(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-172
Ensembl Y60A3A.6
Entrez Gene 190434 Entrez gene
SwissProt Q9U1Z7 EMBL-EBI
WormBase CE36046 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60394 Hypothetical protein Y60A3A.6 [Caenorhabditis elegans] ref|NP_507864.2| Serpentine Receptor, class H family member (srh-172) [Caenorhabditis elegans] 1.0E-164
blast CAB60392 Hypothetical protein Y60A3A.5 [Caenorhabditis elegans] ref|NP_507865.1| Serpentine Receptor, class H family member (srh-171) [Caenorhabditis elegans] 1.0E-113
blast CAB04365 Hypothetical protein F40D4.1 [Caenorhabditis elegans] ref|NP_507348.1| Serpentine Receptor, class H family member (srh-174) [Caenorhabditis elegans] 1.0E-111
blast CAE64895 Hypothetical protein CBG09709 [Caenorhabditis briggsae] 1.0E-61
blast CAB60394 Hypothetical protein Y60A3A.6 [Caenorhabditis elegans] ref|NP_507864.2| Serpentine Receptor, class H family member (srh-172) [Caenorhabditis elegans] 7.0E-59
blast CAB60392 Hypothetical protein Y60A3A.5 [Caenorhabditis elegans] ref|NP_507865.1| Serpentine Receptor, class H family member (srh-171) [Caenorhabditis elegans] 3.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.4E-65
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.2E-61
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507864.2 7 17-39,52-74,94-116,136-158,192-214,237-259,274-296
Y60A3A.6 7 17-39,52-74,94-116,136-158,192-214,237-259,274-296
SNAP00000032805 5 31-53,66-88,134-156,180-202,217-236
Sequence
Target Sequence 
>C. ELEGANS:182637_AT
ctccagcgttcctagacatacctagtgaagaatatggaagggtatttacttttgaaaaaa
tcccttgcatccccagtgacatacccttccgccctggttactttgtcctggcaactgaca
acctaatcttctgcctttgcctatctctgatgttatcatttgtggtaccccaggtggttt
ttttcgtagcctctatattccgctttctatccaacaccgtatcccactcccaaaccacaa
ctcgtctacaacgtcaattcttcattgcaatgtgcatccagctgttcattccgtttgtgg
tgatattttcgccggctctttttgtagttctagcgattcgatatgactattataatcaag
ctgcaaacaacatggctatggctgcaattgcattccatggagtttttactacactgacta
tgattatggtgcatacaccttatcggcatgctactttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCAGCGTTCCTAGACATACCTAG 244 235 506 Antisense
CAACTGACAACCTAATCTTCTGCCT 83 187 617 Antisense
CCTTTGCCTATCTCTGATGTTATCA 269 269 639 Antisense
GATGTTATCATTTGTGGTACCCCAG 366 409 654 Antisense
TTTTTCGTAGCCTCTATATTCCGCT 345 673 685 Antisense
ATTGCAATGTGCATCCAGCTGTTCA 135 7 769 Antisense
CCAGCTGTTCATTCCGTTTGTGGTG 27 273 783 Antisense
TTTGTGGTGATATTTTCGCCGGCTC 389 667 799 Antisense
CGCCGGCTCTTTTTGTAGTTCTAGC 237 257 815 Antisense
GGCTGCAATTGCATTCCATGGAGTT 610 539 885 Antisense
TACACCTTATCGGCATGCTACTTTG 130 643 939 Antisense
Sequence Source Affymetrix Proprietary Database